Gene : AtkdsA1 A. thaliana TAIR10
Primary Identifier:  ? AT1G79500 Defline:  (1 of 2) 2.5.1.55 - 3-deoxy-8-phosphooctulonate synthase / Phospho-2-keto-3-deoxyoctonate aldolase
Genomic Order:  6927 Name:  ? AT1G79500
Secondary Identifier:  ? PAC:19652899
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1269 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G79500 0.5kb upstream 0.5kb upstream 6518 true Chr1: 29902920-29909437 Arabidopsis thaliana
AT1G79500 0.5kb upstream 0.5kb upstream 500 false Chr1: 29902920-29903419 Arabidopsis thaliana
AT1G79500 0.5kb downstream 0.5kb downstream 6518 true Chr1: 29903420-29909937 Arabidopsis thaliana
AT1G79500 0.5kb downstream 0.5kb downstream 500 false Chr1: 29909438-29909937 Arabidopsis thaliana
AT1G79500 1.0kb upstream 1.0kb upstream 7018 true Chr1: 29902420-29909437 Arabidopsis thaliana
AT1G79500 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29902420-29903419 Arabidopsis thaliana
AT1G79500 1.0kb downstream 1.0kb downstream 7018 true Chr1: 29903420-29910437 Arabidopsis thaliana
AT1G79500 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29909438-29910437 Arabidopsis thaliana
AT1G79500 2.0kb upstream 2.0kb upstream 8018 true Chr1: 29901420-29909437 Arabidopsis thaliana
AT1G79500 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29901420-29903419 Arabidopsis thaliana
AT1G79500 2.0kb downstream 2.0kb downstream 8018 true Chr1: 29903420-29911437 Arabidopsis thaliana
AT1G79500 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29909438-29911437 Arabidopsis thaliana
AT1G79500 5.0kb upstream 5.0kb upstream 11018 true Chr1: 29898420-29909437 Arabidopsis thaliana
AT1G79500 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29898420-29903419 Arabidopsis thaliana
AT1G79500 5.0kb downstream 5.0kb downstream 11018 true Chr1: 29903420-29914437 Arabidopsis thaliana
AT1G79500 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29909438-29914437 Arabidopsis thaliana
AT1G79500 10.0kb upstream 10.0kb upstream 16018 true Chr1: 29893420-29909437 Arabidopsis thaliana
AT1G79500 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29893420-29903419 Arabidopsis thaliana
AT1G79500 10.0kb downstream 10.0kb downstream 16018 true Chr1: 29903420-29919437 Arabidopsis thaliana
AT1G79500 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29909438-29919437 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379396 5261 Brassicaceae View MSA
123829711 5264 Brassicales-Malvales View MSA
124345040 5266 SBM View MSA
124244021 5268 Malvidae View MSA
124065016 5270 Rosid View MSA
123738710 5271 Pentapetalae View MSA
122788202 5272 Eudicot View MSA
122050140 5273 Angiosperm View MSA
121346522 5274 Embryophyte View MSA
123424720 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.099        
cufflinks 2.574       High
cufflinks 1.113        
cufflinks 2.209        
cufflinks 1.026       Low
cufflinks 2.186        

0 Strain