Gene : CHX2 A. thaliana TAIR10
Primary Identifier:  ? AT1G79400 Defline:  (1 of 2) PTHR32468//PTHR32468:SF28 - FAMILY NOT NAMED // CATION/H(+) ANTIPORTER 1-RELATED
Genomic Order:  6917 Name:  ? AT1G79400
Secondary Identifier:  ? PAC:19656169
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G79400 0.5kb upstream 0.5kb upstream 3349 true Chr1: 29864492-29867840 Arabidopsis thaliana
AT1G79400 0.5kb upstream 0.5kb upstream 500 false Chr1: 29864492-29864991 Arabidopsis thaliana
AT1G79400 0.5kb downstream 0.5kb downstream 3349 true Chr1: 29864992-29868340 Arabidopsis thaliana
AT1G79400 0.5kb downstream 0.5kb downstream 500 false Chr1: 29867841-29868340 Arabidopsis thaliana
AT1G79400 1.0kb upstream 1.0kb upstream 3849 true Chr1: 29863992-29867840 Arabidopsis thaliana
AT1G79400 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29863992-29864991 Arabidopsis thaliana
AT1G79400 1.0kb downstream 1.0kb downstream 3849 true Chr1: 29864992-29868840 Arabidopsis thaliana
AT1G79400 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29867841-29868840 Arabidopsis thaliana
AT1G79400 2.0kb upstream 2.0kb upstream 4849 true Chr1: 29862992-29867840 Arabidopsis thaliana
AT1G79400 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29862992-29864991 Arabidopsis thaliana
AT1G79400 2.0kb downstream 2.0kb downstream 4849 true Chr1: 29864992-29869840 Arabidopsis thaliana
AT1G79400 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29867841-29869840 Arabidopsis thaliana
AT1G79400 5.0kb upstream 5.0kb upstream 7849 true Chr1: 29859992-29867840 Arabidopsis thaliana
AT1G79400 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29859992-29864991 Arabidopsis thaliana
AT1G79400 5.0kb downstream 5.0kb downstream 7849 true Chr1: 29864992-29872840 Arabidopsis thaliana
AT1G79400 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29867841-29872840 Arabidopsis thaliana
AT1G79400 10.0kb upstream 10.0kb upstream 12849 true Chr1: 29854992-29867840 Arabidopsis thaliana
AT1G79400 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29854992-29864991 Arabidopsis thaliana
AT1G79400 10.0kb downstream 10.0kb downstream 12849 true Chr1: 29864992-29877840 Arabidopsis thaliana
AT1G79400 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29867841-29877840 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376926 5261 Brassicaceae View MSA
123829579 5264 Brassicales-Malvales View MSA
124347041 5266 SBM View MSA
124244632 5268 Malvidae View MSA
124061275 5270 Rosid View MSA
123738472 5271 Pentapetalae View MSA
122769923 5272 Eudicot View MSA
122048116 5273 Angiosperm View MSA
121310852 5274 Embryophyte View MSA
123348237 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.139     Low High
cufflinks 0.032     Low  
cufflinks 0.005     Low Low
cufflinks 0.011     Low  
cufflinks 0.054     Low  
cufflinks 0.039     Low  

0 Strain