Gene : AT1G79110 A. thaliana TAIR10
Defline:  (1 of 11) K19042 - E3 ubiquitin-protein ligase BOI and related proteins [EC:6.3.2.19] (BOI) Genomic Order:  6892
Name:  ? AT1G79110 Secondary Identifier:  ? PAC:19651284
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G79110 0.5kb upstream 0.5kb upstream 2048 true Chr1: 29758657-29760704 Arabidopsis thaliana
AT1G79110 0.5kb upstream 0.5kb upstream 500 false Chr1: 29758657-29759156 Arabidopsis thaliana
AT1G79110 0.5kb downstream 0.5kb downstream 2048 true Chr1: 29759157-29761204 Arabidopsis thaliana
AT1G79110 0.5kb downstream 0.5kb downstream 500 false Chr1: 29760705-29761204 Arabidopsis thaliana
AT1G79110 1.0kb upstream 1.0kb upstream 2548 true Chr1: 29758157-29760704 Arabidopsis thaliana
AT1G79110 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29758157-29759156 Arabidopsis thaliana
AT1G79110 1.0kb downstream 1.0kb downstream 2548 true Chr1: 29759157-29761704 Arabidopsis thaliana
AT1G79110 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29760705-29761704 Arabidopsis thaliana
AT1G79110 2.0kb upstream 2.0kb upstream 3548 true Chr1: 29757157-29760704 Arabidopsis thaliana
AT1G79110 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29757157-29759156 Arabidopsis thaliana
AT1G79110 2.0kb downstream 2.0kb downstream 3548 true Chr1: 29759157-29762704 Arabidopsis thaliana
AT1G79110 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29760705-29762704 Arabidopsis thaliana
AT1G79110 5.0kb upstream 5.0kb upstream 6548 true Chr1: 29754157-29760704 Arabidopsis thaliana
AT1G79110 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29754157-29759156 Arabidopsis thaliana
AT1G79110 5.0kb downstream 5.0kb downstream 6548 true Chr1: 29759157-29765704 Arabidopsis thaliana
AT1G79110 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29760705-29765704 Arabidopsis thaliana
AT1G79110 10.0kb upstream 10.0kb upstream 11548 true Chr1: 29749157-29760704 Arabidopsis thaliana
AT1G79110 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29749157-29759156 Arabidopsis thaliana
AT1G79110 10.0kb downstream 10.0kb downstream 11548 true Chr1: 29759157-29770704 Arabidopsis thaliana
AT1G79110 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29760705-29770704 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365157 5261 Brassicaceae View MSA
123837384 5264 Brassicales-Malvales View MSA
124345958 5266 SBM View MSA
124243866 5268 Malvidae View MSA
124065052 5270 Rosid View MSA
123752259 5271 Pentapetalae View MSA
122794971 5272 Eudicot View MSA
122050089 5273 Angiosperm View MSA
121348016 5274 Embryophyte View MSA
123380706 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.728       High
cufflinks 4.959        
cufflinks 3.501        
cufflinks 5.286        
cufflinks 3.085       Low
cufflinks 4.969        

0 Strain