Gene : AT1G78915 A. thaliana TAIR10
Defline:  (1 of 1) PTHR26312//PTHR26312:SF0 - FAMILY NOT NAMED // TETRATRICOPEPTIDE REPEAT PROTEIN 5 Genomic Order:  6869
Name:  ? AT1G78915 Secondary Identifier:  ? PAC:19656607
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G78915 0.5kb upstream 0.5kb upstream 4277 true Chr1: 29667565-29671841 Arabidopsis thaliana
AT1G78915 0.5kb upstream 0.5kb upstream 500 false Chr1: 29671342-29671841 Arabidopsis thaliana
AT1G78915 0.5kb downstream 0.5kb downstream 4277 true Chr1: 29667065-29671341 Arabidopsis thaliana
AT1G78915 0.5kb downstream 0.5kb downstream 500 false Chr1: 29667065-29667564 Arabidopsis thaliana
AT1G78915 1.0kb upstream 1.0kb upstream 4777 true Chr1: 29667565-29672341 Arabidopsis thaliana
AT1G78915 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29671342-29672341 Arabidopsis thaliana
AT1G78915 1.0kb downstream 1.0kb downstream 4777 true Chr1: 29666565-29671341 Arabidopsis thaliana
AT1G78915 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29666565-29667564 Arabidopsis thaliana
AT1G78915 2.0kb upstream 2.0kb upstream 5777 true Chr1: 29667565-29673341 Arabidopsis thaliana
AT1G78915 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29671342-29673341 Arabidopsis thaliana
AT1G78915 2.0kb downstream 2.0kb downstream 5777 true Chr1: 29665565-29671341 Arabidopsis thaliana
AT1G78915 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29665565-29667564 Arabidopsis thaliana
AT1G78915 5.0kb upstream 5.0kb upstream 8777 true Chr1: 29667565-29676341 Arabidopsis thaliana
AT1G78915 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29671342-29676341 Arabidopsis thaliana
AT1G78915 5.0kb downstream 5.0kb downstream 8777 true Chr1: 29662565-29671341 Arabidopsis thaliana
AT1G78915 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29662565-29667564 Arabidopsis thaliana
AT1G78915 10.0kb upstream 10.0kb upstream 13777 true Chr1: 29667565-29681341 Arabidopsis thaliana
AT1G78915 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29671342-29681341 Arabidopsis thaliana
AT1G78915 10.0kb downstream 10.0kb downstream 13777 true Chr1: 29657565-29671341 Arabidopsis thaliana
AT1G78915 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29657565-29667564 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041405 5273 Angiosperm View MSA
122376485 5261 Brassicaceae View MSA
123833594 5264 Brassicales-Malvales View MSA
124321879 5266 SBM View MSA
124251725 5268 Malvidae View MSA
124065158 5270 Rosid View MSA
123747487 5271 Pentapetalae View MSA
122792226 5272 Eudicot View MSA
121343833 5274 Embryophyte View MSA
123426406 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.208        
cufflinks 0.588        
cufflinks 4.697       High
cufflinks 0.687        
cufflinks 4.238        
cufflinks 0.383       Low

0 Strain