Gene : AT1G78930 A. thaliana TAIR10
Defline:  (1 of 1) PTHR13068//PTHR13068:SF3 - CGI-12 PROTEIN-RELATED // MTERF DOMAIN-CONTAINING PROTEIN 1, MITOCHONDRIAL Genomic Order:  6872
Name:  ? AT1G78930 Secondary Identifier:  ? PAC:19649078
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G78930 0.5kb upstream 0.5kb upstream 3161 true Chr1: 29678097-29681257 Arabidopsis thaliana
AT1G78930 0.5kb upstream 0.5kb upstream 500 false Chr1: 29680758-29681257 Arabidopsis thaliana
AT1G78930 0.5kb downstream 0.5kb downstream 3161 true Chr1: 29677597-29680757 Arabidopsis thaliana
AT1G78930 0.5kb downstream 0.5kb downstream 500 false Chr1: 29677597-29678096 Arabidopsis thaliana
AT1G78930 1.0kb upstream 1.0kb upstream 3661 true Chr1: 29678097-29681757 Arabidopsis thaliana
AT1G78930 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29680758-29681757 Arabidopsis thaliana
AT1G78930 1.0kb downstream 1.0kb downstream 3661 true Chr1: 29677097-29680757 Arabidopsis thaliana
AT1G78930 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29677097-29678096 Arabidopsis thaliana
AT1G78930 2.0kb upstream 2.0kb upstream 4661 true Chr1: 29678097-29682757 Arabidopsis thaliana
AT1G78930 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29680758-29682757 Arabidopsis thaliana
AT1G78930 2.0kb downstream 2.0kb downstream 4661 true Chr1: 29676097-29680757 Arabidopsis thaliana
AT1G78930 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29676097-29678096 Arabidopsis thaliana
AT1G78930 5.0kb upstream 5.0kb upstream 7661 true Chr1: 29678097-29685757 Arabidopsis thaliana
AT1G78930 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29680758-29685757 Arabidopsis thaliana
AT1G78930 5.0kb downstream 5.0kb downstream 7661 true Chr1: 29673097-29680757 Arabidopsis thaliana
AT1G78930 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29673097-29678096 Arabidopsis thaliana
AT1G78930 10.0kb upstream 10.0kb upstream 12661 true Chr1: 29678097-29690757 Arabidopsis thaliana
AT1G78930 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29680758-29690757 Arabidopsis thaliana
AT1G78930 10.0kb downstream 10.0kb downstream 12661 true Chr1: 29668097-29680757 Arabidopsis thaliana
AT1G78930 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29668097-29678096 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041220 5273 Angiosperm View MSA
122369534 5261 Brassicaceae View MSA
123830103 5264 Brassicales-Malvales View MSA
124344948 5266 SBM View MSA
124237993 5268 Malvidae View MSA
124065704 5270 Rosid View MSA
123736399 5271 Pentapetalae View MSA
122793347 5272 Eudicot View MSA
121345180 5274 Embryophyte View MSA
123427998 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.662       High
cufflinks 1.893        
cufflinks 1.703        
cufflinks 1.9        
cufflinks 1.324       Low
cufflinks 1.839        

0 Strain