Gene : LSH7 A. thaliana TAIR10
Primary Identifier:  ? AT1G78815 Defline:  (1 of 2) PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED
Genomic Order:  6856 Name:  ? AT1G78815
Secondary Identifier:  ? PAC:19651809
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G78815 0.5kb upstream 0.5kb upstream 1503 true Chr1: 29631743-29633245 Arabidopsis thaliana
AT1G78815 0.5kb upstream 0.5kb upstream 500 false Chr1: 29632746-29633245 Arabidopsis thaliana
AT1G78815 0.5kb downstream 0.5kb downstream 1503 true Chr1: 29631243-29632745 Arabidopsis thaliana
AT1G78815 0.5kb downstream 0.5kb downstream 500 false Chr1: 29631243-29631742 Arabidopsis thaliana
AT1G78815 1.0kb upstream 1.0kb upstream 2003 true Chr1: 29631743-29633745 Arabidopsis thaliana
AT1G78815 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29632746-29633745 Arabidopsis thaliana
AT1G78815 1.0kb downstream 1.0kb downstream 2003 true Chr1: 29630743-29632745 Arabidopsis thaliana
AT1G78815 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29630743-29631742 Arabidopsis thaliana
AT1G78815 2.0kb upstream 2.0kb upstream 3003 true Chr1: 29631743-29634745 Arabidopsis thaliana
AT1G78815 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29632746-29634745 Arabidopsis thaliana
AT1G78815 2.0kb downstream 2.0kb downstream 3003 true Chr1: 29629743-29632745 Arabidopsis thaliana
AT1G78815 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29629743-29631742 Arabidopsis thaliana
AT1G78815 5.0kb upstream 5.0kb upstream 6003 true Chr1: 29631743-29637745 Arabidopsis thaliana
AT1G78815 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29632746-29637745 Arabidopsis thaliana
AT1G78815 5.0kb downstream 5.0kb downstream 6003 true Chr1: 29626743-29632745 Arabidopsis thaliana
AT1G78815 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29626743-29631742 Arabidopsis thaliana
AT1G78815 10.0kb upstream 10.0kb upstream 11003 true Chr1: 29631743-29642745 Arabidopsis thaliana
AT1G78815 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29632746-29642745 Arabidopsis thaliana
AT1G78815 10.0kb downstream 10.0kb downstream 11003 true Chr1: 29621743-29632745 Arabidopsis thaliana
AT1G78815 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29621743-29631742 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792183 5273 Angiosperm View MSA
122378552 5261 Brassicaceae View MSA
123836068 5264 Brassicales-Malvales View MSA
124347422 5266 SBM View MSA
124244841 5268 Malvidae View MSA
124074351 5270 Rosid View MSA
123750207 5271 Pentapetalae View MSA
122796804 5272 Eudicot View MSA
121063429 5274 Embryophyte View MSA
123103178 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.323        
cufflinks 94.722     High  
cufflinks 0.109     Low  
cufflinks 55.485     High  
cufflinks 0.086     Low Low
cufflinks 68.202     High  

0 Strain