Gene : SPS1 A. thaliana TAIR10
Primary Identifier:  ? AT1G78510 Defline:  (1 of 2) 2.5.1.90 - All-trans-octaprenyl-diphosphate synthase / Trans-prenyltransferase
Genomic Order:  6825 Name:  ? AT1G78510
Secondary Identifier:  ? PAC:19654113
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana HEXPPSYN-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-5120 Arabidopsis thaliana pathologic  
Athaliana PWY-5783 Arabidopsis thaliana pathologic  
Athaliana PWY-5805 Arabidopsis thaliana pathologic  
Athaliana PWY-5807 Arabidopsis thaliana pathologic  
Athaliana PWY-5864 Arabidopsis thaliana pathologic  
Athaliana PWY-5910 Arabidopsis thaliana pathologic  
Athaliana PWY-6520 Arabidopsis thaliana pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G78510 0.5kb upstream 0.5kb upstream 2633 true Chr1: 29535285-29537917 Arabidopsis thaliana
AT1G78510 0.5kb upstream 0.5kb upstream 500 false Chr1: 29537418-29537917 Arabidopsis thaliana
AT1G78510 0.5kb downstream 0.5kb downstream 2633 true Chr1: 29534785-29537417 Arabidopsis thaliana
AT1G78510 0.5kb downstream 0.5kb downstream 500 false Chr1: 29534785-29535284 Arabidopsis thaliana
AT1G78510 1.0kb upstream 1.0kb upstream 3133 true Chr1: 29535285-29538417 Arabidopsis thaliana
AT1G78510 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29537418-29538417 Arabidopsis thaliana
AT1G78510 1.0kb downstream 1.0kb downstream 3133 true Chr1: 29534285-29537417 Arabidopsis thaliana
AT1G78510 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29534285-29535284 Arabidopsis thaliana
AT1G78510 2.0kb upstream 2.0kb upstream 4133 true Chr1: 29535285-29539417 Arabidopsis thaliana
AT1G78510 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29537418-29539417 Arabidopsis thaliana
AT1G78510 2.0kb downstream 2.0kb downstream 4133 true Chr1: 29533285-29537417 Arabidopsis thaliana
AT1G78510 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29533285-29535284 Arabidopsis thaliana
AT1G78510 5.0kb upstream 5.0kb upstream 7133 true Chr1: 29535285-29542417 Arabidopsis thaliana
AT1G78510 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29537418-29542417 Arabidopsis thaliana
AT1G78510 5.0kb downstream 5.0kb downstream 7133 true Chr1: 29530285-29537417 Arabidopsis thaliana
AT1G78510 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29530285-29535284 Arabidopsis thaliana
AT1G78510 10.0kb upstream 10.0kb upstream 12133 true Chr1: 29535285-29547417 Arabidopsis thaliana
AT1G78510 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29537418-29547417 Arabidopsis thaliana
AT1G78510 10.0kb downstream 10.0kb downstream 12133 true Chr1: 29525285-29537417 Arabidopsis thaliana
AT1G78510 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29525285-29535284 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041065 5273 Angiosperm View MSA
122373293 5261 Brassicaceae View MSA
123836843 5264 Brassicales-Malvales View MSA
124340662 5266 SBM View MSA
124241252 5268 Malvidae View MSA
124065347 5270 Rosid View MSA
123746184 5271 Pentapetalae View MSA
122791358 5272 Eudicot View MSA
121345449 5274 Embryophyte View MSA
123424009 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.306        
cufflinks 1.551        
cufflinks 7.554        
cufflinks 1.765        
cufflinks 8.515       High
cufflinks 1.1       Low

0 Strain