Gene : AT1G78500 A. thaliana TAIR10
Defline:  (1 of 1) 5.4.99.39//5.4.99.40//5.4.99.52//5.4.99.54 - Beta-amyrin synthase / 2,3-oxidosqualene beta-amyrin cyclase // Alpha-amyrin synthase / 2,3-oxidosqualene alpha-amyrin cyclase // Alpha-seco-amyrin synthase // Beta-seco-amyrin synthase Genomic Order:  6824
Name:  ? AT1G78500 Secondary Identifier:  ? PAC:19655323
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5377 Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G78500 0.5kb upstream 0.5kb upstream 4032 true Chr1: 29531146-29535177 Arabidopsis thaliana
AT1G78500 0.5kb upstream 0.5kb upstream 500 false Chr1: 29531146-29531645 Arabidopsis thaliana
AT1G78500 0.5kb downstream 0.5kb downstream 4032 true Chr1: 29531646-29535677 Arabidopsis thaliana
AT1G78500 0.5kb downstream 0.5kb downstream 500 false Chr1: 29535178-29535677 Arabidopsis thaliana
AT1G78500 1.0kb upstream 1.0kb upstream 4532 true Chr1: 29530646-29535177 Arabidopsis thaliana
AT1G78500 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29530646-29531645 Arabidopsis thaliana
AT1G78500 1.0kb downstream 1.0kb downstream 4532 true Chr1: 29531646-29536177 Arabidopsis thaliana
AT1G78500 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29535178-29536177 Arabidopsis thaliana
AT1G78500 2.0kb upstream 2.0kb upstream 5532 true Chr1: 29529646-29535177 Arabidopsis thaliana
AT1G78500 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29529646-29531645 Arabidopsis thaliana
AT1G78500 2.0kb downstream 2.0kb downstream 5532 true Chr1: 29531646-29537177 Arabidopsis thaliana
AT1G78500 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29535178-29537177 Arabidopsis thaliana
AT1G78500 5.0kb upstream 5.0kb upstream 8532 true Chr1: 29526646-29535177 Arabidopsis thaliana
AT1G78500 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29526646-29531645 Arabidopsis thaliana
AT1G78500 5.0kb downstream 5.0kb downstream 8532 true Chr1: 29531646-29540177 Arabidopsis thaliana
AT1G78500 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29535178-29540177 Arabidopsis thaliana
AT1G78500 10.0kb upstream 10.0kb upstream 13532 true Chr1: 29521646-29535177 Arabidopsis thaliana
AT1G78500 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29521646-29531645 Arabidopsis thaliana
AT1G78500 10.0kb downstream 10.0kb downstream 13532 true Chr1: 29531646-29545177 Arabidopsis thaliana
AT1G78500 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29535178-29545177 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028235 5273 Angiosperm View MSA
122378105 5261 Brassicaceae View MSA
123841722 5264 Brassicales-Malvales View MSA
124351667 5266 SBM View MSA
124245550 5268 Malvidae View MSA
124052067 5270 Rosid View MSA
123750414 5271 Pentapetalae View MSA
122773643 5272 Eudicot View MSA
121297756 5274 Embryophyte View MSA
123335781 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.008     Low  
cufflinks 0.125     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.118     Low  
cufflinks 0.004     Low Low
cufflinks 0.157     Low  

0 Strain