Gene : AT1G78520 A. thaliana TAIR10
Defline:  (1 of 13) PTHR31044:SF19 - CARBOHYDRATE-BINDING X8 DOMAIN-CONTAINING PROTEIN-RELATED Genomic Order:  6826
Name:  ? AT1G78520 Secondary Identifier:  ? PAC:19652989
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G78520 0.5kb upstream 0.5kb upstream 1181 true Chr1: 29537976-29539156 Arabidopsis thaliana
AT1G78520 0.5kb upstream 0.5kb upstream 500 false Chr1: 29538657-29539156 Arabidopsis thaliana
AT1G78520 0.5kb downstream 0.5kb downstream 1181 true Chr1: 29537476-29538656 Arabidopsis thaliana
AT1G78520 0.5kb downstream 0.5kb downstream 500 false Chr1: 29537476-29537975 Arabidopsis thaliana
AT1G78520 1.0kb upstream 1.0kb upstream 1681 true Chr1: 29537976-29539656 Arabidopsis thaliana
AT1G78520 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29538657-29539656 Arabidopsis thaliana
AT1G78520 1.0kb downstream 1.0kb downstream 1681 true Chr1: 29536976-29538656 Arabidopsis thaliana
AT1G78520 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29536976-29537975 Arabidopsis thaliana
AT1G78520 2.0kb upstream 2.0kb upstream 2681 true Chr1: 29537976-29540656 Arabidopsis thaliana
AT1G78520 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29538657-29540656 Arabidopsis thaliana
AT1G78520 2.0kb downstream 2.0kb downstream 2681 true Chr1: 29535976-29538656 Arabidopsis thaliana
AT1G78520 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29535976-29537975 Arabidopsis thaliana
AT1G78520 5.0kb upstream 5.0kb upstream 5681 true Chr1: 29537976-29543656 Arabidopsis thaliana
AT1G78520 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29538657-29543656 Arabidopsis thaliana
AT1G78520 5.0kb downstream 5.0kb downstream 5681 true Chr1: 29532976-29538656 Arabidopsis thaliana
AT1G78520 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29532976-29537975 Arabidopsis thaliana
AT1G78520 10.0kb upstream 10.0kb upstream 10681 true Chr1: 29537976-29548656 Arabidopsis thaliana
AT1G78520 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29538657-29548656 Arabidopsis thaliana
AT1G78520 10.0kb downstream 10.0kb downstream 10681 true Chr1: 29527976-29538656 Arabidopsis thaliana
AT1G78520 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29527976-29537975 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370266 5261 Brassicaceae View MSA
123838371 5264 Brassicales-Malvales View MSA
124339311 5266 SBM View MSA
124237376 5268 Malvidae View MSA
124067142 5270 Rosid View MSA
123750670 5271 Pentapetalae View MSA
122789328 5272 Eudicot View MSA
122050272 5273 Angiosperm View MSA
123429175 5275 Viridiplantae View MSA
121349342 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.021     Low Low
cufflinks 0.334     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.611        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.011        

0 Strain