Gene : TSD2 A. thaliana TAIR10
Primary Identifier:  ? AT1G78240 Defline:  (1 of 1) PTHR10108//PTHR10108:SF899 - METHYLTRANSFERASE // PECTIN METHYLTRANSFERASE QUA2-RELATED
Genomic Order:  6800 Name:  ? AT1G78240
Secondary Identifier:  ? PAC:19652544
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0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G78240 0.5kb upstream 0.5kb upstream 4243 true Chr1: 29432829-29437071 Arabidopsis thaliana
AT1G78240 0.5kb upstream 0.5kb upstream 500 false Chr1: 29436572-29437071 Arabidopsis thaliana
AT1G78240 0.5kb downstream 0.5kb downstream 4243 true Chr1: 29432329-29436571 Arabidopsis thaliana
AT1G78240 0.5kb downstream 0.5kb downstream 500 false Chr1: 29432329-29432828 Arabidopsis thaliana
AT1G78240 1.0kb upstream 1.0kb upstream 4743 true Chr1: 29432829-29437571 Arabidopsis thaliana
AT1G78240 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29436572-29437571 Arabidopsis thaliana
AT1G78240 1.0kb downstream 1.0kb downstream 4743 true Chr1: 29431829-29436571 Arabidopsis thaliana
AT1G78240 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29431829-29432828 Arabidopsis thaliana
AT1G78240 2.0kb upstream 2.0kb upstream 5743 true Chr1: 29432829-29438571 Arabidopsis thaliana
AT1G78240 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29436572-29438571 Arabidopsis thaliana
AT1G78240 2.0kb downstream 2.0kb downstream 5743 true Chr1: 29430829-29436571 Arabidopsis thaliana
AT1G78240 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29430829-29432828 Arabidopsis thaliana
AT1G78240 5.0kb upstream 5.0kb upstream 8743 true Chr1: 29432829-29441571 Arabidopsis thaliana
AT1G78240 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29436572-29441571 Arabidopsis thaliana
AT1G78240 5.0kb downstream 5.0kb downstream 8743 true Chr1: 29427829-29436571 Arabidopsis thaliana
AT1G78240 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29427829-29432828 Arabidopsis thaliana
AT1G78240 10.0kb upstream 10.0kb upstream 13743 true Chr1: 29432829-29446571 Arabidopsis thaliana
AT1G78240 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29436572-29446571 Arabidopsis thaliana
AT1G78240 10.0kb downstream 10.0kb downstream 13743 true Chr1: 29422829-29436571 Arabidopsis thaliana
AT1G78240 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29422829-29432828 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374455 5261 Brassicaceae View MSA
123832789 5264 Brassicales-Malvales View MSA
124337729 5266 SBM View MSA
124251321 5268 Malvidae View MSA
124068394 5270 Rosid View MSA
123753010 5271 Pentapetalae View MSA
122796119 5272 Eudicot View MSA
122048389 5273 Angiosperm View MSA
121346192 5274 Embryophyte View MSA
123380346 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.821       Low
cufflinks 21.596        
cufflinks 17.047        
cufflinks 19.626        
cufflinks 19.66        
cufflinks 19.55        

0 Strain