Gene : AGL66 A. thaliana TAIR10
Primary Identifier:  ? AT1G77980 Defline:  (1 of 3) PTHR11945//PTHR11945:SF154 - MADS BOX PROTEIN // F2E2.20-RELATED
Genomic Order:  6773 Name:  ? AT1G77980
Secondary Identifier:  ? PAC:19650219
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G77980 0.5kb upstream 0.5kb upstream 2727 true Chr1: 29314841-29317567 Arabidopsis thaliana
AT1G77980 0.5kb upstream 0.5kb upstream 500 false Chr1: 29317068-29317567 Arabidopsis thaliana
AT1G77980 0.5kb downstream 0.5kb downstream 2727 true Chr1: 29314341-29317067 Arabidopsis thaliana
AT1G77980 0.5kb downstream 0.5kb downstream 500 false Chr1: 29314341-29314840 Arabidopsis thaliana
AT1G77980 1.0kb upstream 1.0kb upstream 3227 true Chr1: 29314841-29318067 Arabidopsis thaliana
AT1G77980 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29317068-29318067 Arabidopsis thaliana
AT1G77980 1.0kb downstream 1.0kb downstream 3227 true Chr1: 29313841-29317067 Arabidopsis thaliana
AT1G77980 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29313841-29314840 Arabidopsis thaliana
AT1G77980 2.0kb upstream 2.0kb upstream 4227 true Chr1: 29314841-29319067 Arabidopsis thaliana
AT1G77980 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29317068-29319067 Arabidopsis thaliana
AT1G77980 2.0kb downstream 2.0kb downstream 4227 true Chr1: 29312841-29317067 Arabidopsis thaliana
AT1G77980 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29312841-29314840 Arabidopsis thaliana
AT1G77980 5.0kb upstream 5.0kb upstream 7227 true Chr1: 29314841-29322067 Arabidopsis thaliana
AT1G77980 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29317068-29322067 Arabidopsis thaliana
AT1G77980 5.0kb downstream 5.0kb downstream 7227 true Chr1: 29309841-29317067 Arabidopsis thaliana
AT1G77980 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29309841-29314840 Arabidopsis thaliana
AT1G77980 10.0kb upstream 10.0kb upstream 12227 true Chr1: 29314841-29327067 Arabidopsis thaliana
AT1G77980 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29317068-29327067 Arabidopsis thaliana
AT1G77980 10.0kb downstream 10.0kb downstream 12227 true Chr1: 29304841-29317067 Arabidopsis thaliana
AT1G77980 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29304841-29314840 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368768 5261 Brassicaceae View MSA
123838509 5264 Brassicales-Malvales View MSA
124350200 5266 SBM View MSA
124248545 5268 Malvidae View MSA
124063707 5270 Rosid View MSA
123753647 5271 Pentapetalae View MSA
122786853 5272 Eudicot View MSA
122050633 5273 Angiosperm View MSA
121350455 5274 Embryophyte View MSA
123427239 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.02     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.028     Low  

0 Strain