Gene : AT1G78150 A. thaliana TAIR10
Defline:  (1 of 4) PTHR31132:SF2 - EXPRESSED PROTEIN Genomic Order:  6790
Name:  ? AT1G78150 Secondary Identifier:  ? PAC:19652737
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G78150 0.5kb upstream 0.5kb upstream 2605 true Chr1: 29404148-29406752 Arabidopsis thaliana
AT1G78150 0.5kb upstream 0.5kb upstream 500 false Chr1: 29404148-29404647 Arabidopsis thaliana
AT1G78150 0.5kb downstream 0.5kb downstream 2605 true Chr1: 29404648-29407252 Arabidopsis thaliana
AT1G78150 0.5kb downstream 0.5kb downstream 500 false Chr1: 29406753-29407252 Arabidopsis thaliana
AT1G78150 1.0kb upstream 1.0kb upstream 3105 true Chr1: 29403648-29406752 Arabidopsis thaliana
AT1G78150 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29403648-29404647 Arabidopsis thaliana
AT1G78150 1.0kb downstream 1.0kb downstream 3105 true Chr1: 29404648-29407752 Arabidopsis thaliana
AT1G78150 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29406753-29407752 Arabidopsis thaliana
AT1G78150 2.0kb upstream 2.0kb upstream 4105 true Chr1: 29402648-29406752 Arabidopsis thaliana
AT1G78150 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29402648-29404647 Arabidopsis thaliana
AT1G78150 2.0kb downstream 2.0kb downstream 4105 true Chr1: 29404648-29408752 Arabidopsis thaliana
AT1G78150 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29406753-29408752 Arabidopsis thaliana
AT1G78150 5.0kb upstream 5.0kb upstream 7105 true Chr1: 29399648-29406752 Arabidopsis thaliana
AT1G78150 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29399648-29404647 Arabidopsis thaliana
AT1G78150 5.0kb downstream 5.0kb downstream 7105 true Chr1: 29404648-29411752 Arabidopsis thaliana
AT1G78150 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29406753-29411752 Arabidopsis thaliana
AT1G78150 10.0kb upstream 10.0kb upstream 12105 true Chr1: 29394648-29406752 Arabidopsis thaliana
AT1G78150 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29394648-29404647 Arabidopsis thaliana
AT1G78150 10.0kb downstream 10.0kb downstream 12105 true Chr1: 29404648-29416752 Arabidopsis thaliana
AT1G78150 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29406753-29416752 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367715 5261 Brassicaceae View MSA
123838185 5264 Brassicales-Malvales View MSA
124339083 5266 SBM View MSA
124250387 5268 Malvidae View MSA
124064048 5270 Rosid View MSA
123745943 5271 Pentapetalae View MSA
122791019 5272 Eudicot View MSA
122045269 5273 Angiosperm View MSA
121344429 5274 Embryophyte View MSA
123426064 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.025        
cufflinks 25.76       High
cufflinks 10.111       Low
cufflinks 25.901       High
cufflinks 10.222       Low
cufflinks 20.673        

0 Strain