Gene : AT1G77890 A. thaliana TAIR10
Defline:  (1 of 2) PTHR21297//PTHR21297:SF1 - DNA-DIRECTED RNA POLYMERASE II // DNA-DIRECTED RNA POLYMERASE II PROTEIN Genomic Order:  6765
Name:  ? AT1G77890 Secondary Identifier:  ? PAC:19651315
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G77890 0.5kb upstream 0.5kb upstream 4538 true Chr1: 29291623-29296160 Arabidopsis thaliana
AT1G77890 0.5kb upstream 0.5kb upstream 500 false Chr1: 29291623-29292122 Arabidopsis thaliana
AT1G77890 0.5kb downstream 0.5kb downstream 4538 true Chr1: 29292123-29296660 Arabidopsis thaliana
AT1G77890 0.5kb downstream 0.5kb downstream 500 false Chr1: 29296161-29296660 Arabidopsis thaliana
AT1G77890 1.0kb upstream 1.0kb upstream 5038 true Chr1: 29291123-29296160 Arabidopsis thaliana
AT1G77890 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29291123-29292122 Arabidopsis thaliana
AT1G77890 1.0kb downstream 1.0kb downstream 5038 true Chr1: 29292123-29297160 Arabidopsis thaliana
AT1G77890 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29296161-29297160 Arabidopsis thaliana
AT1G77890 2.0kb upstream 2.0kb upstream 6038 true Chr1: 29290123-29296160 Arabidopsis thaliana
AT1G77890 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29290123-29292122 Arabidopsis thaliana
AT1G77890 2.0kb downstream 2.0kb downstream 6038 true Chr1: 29292123-29298160 Arabidopsis thaliana
AT1G77890 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29296161-29298160 Arabidopsis thaliana
AT1G77890 5.0kb upstream 5.0kb upstream 9038 true Chr1: 29287123-29296160 Arabidopsis thaliana
AT1G77890 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29287123-29292122 Arabidopsis thaliana
AT1G77890 5.0kb downstream 5.0kb downstream 9038 true Chr1: 29292123-29301160 Arabidopsis thaliana
AT1G77890 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29296161-29301160 Arabidopsis thaliana
AT1G77890 10.0kb upstream 10.0kb upstream 14038 true Chr1: 29282123-29296160 Arabidopsis thaliana
AT1G77890 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29282123-29292122 Arabidopsis thaliana
AT1G77890 10.0kb downstream 10.0kb downstream 14038 true Chr1: 29292123-29306160 Arabidopsis thaliana
AT1G77890 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29296161-29306160 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121511102 5273 Angiosperm View MSA
122372331 5261 Brassicaceae View MSA
123800338 5264 Brassicales-Malvales View MSA
124297759 5266 SBM View MSA
124149566 5268 Malvidae View MSA
123875351 5270 Rosid View MSA
123459185 5271 Pentapetalae View MSA
122494580 5272 Eudicot View MSA
120784167 5274 Embryophyte View MSA
122826101 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.613        
cufflinks 2.022        
cufflinks 1.156       Low
cufflinks 2.182       High
cufflinks 1.498        
cufflinks 1.61        

0 Strain