Gene : VPS45 A. thaliana TAIR10
Primary Identifier:  ? AT1G77140 Defline:  (1 of 1) K12479 - vacuolar protein sorting-associated protein 45 (VPS45)
Genomic Order:  6684 Name:  ? AT1G77140
Secondary Identifier:  ? PAC:19653499
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G77140 0.5kb upstream 0.5kb upstream 4459 true Chr1: 28983525-28987983 Arabidopsis thaliana
AT1G77140 0.5kb upstream 0.5kb upstream 500 false Chr1: 28983525-28984024 Arabidopsis thaliana
AT1G77140 0.5kb downstream 0.5kb downstream 4459 true Chr1: 28984025-28988483 Arabidopsis thaliana
AT1G77140 0.5kb downstream 0.5kb downstream 500 false Chr1: 28987984-28988483 Arabidopsis thaliana
AT1G77140 1.0kb upstream 1.0kb upstream 4959 true Chr1: 28983025-28987983 Arabidopsis thaliana
AT1G77140 1.0kb upstream 1.0kb upstream 1000 false Chr1: 28983025-28984024 Arabidopsis thaliana
AT1G77140 1.0kb downstream 1.0kb downstream 4959 true Chr1: 28984025-28988983 Arabidopsis thaliana
AT1G77140 1.0kb downstream 1.0kb downstream 1000 false Chr1: 28987984-28988983 Arabidopsis thaliana
AT1G77140 2.0kb upstream 2.0kb upstream 5959 true Chr1: 28982025-28987983 Arabidopsis thaliana
AT1G77140 2.0kb upstream 2.0kb upstream 2000 false Chr1: 28982025-28984024 Arabidopsis thaliana
AT1G77140 2.0kb downstream 2.0kb downstream 5959 true Chr1: 28984025-28989983 Arabidopsis thaliana
AT1G77140 2.0kb downstream 2.0kb downstream 2000 false Chr1: 28987984-28989983 Arabidopsis thaliana
AT1G77140 5.0kb upstream 5.0kb upstream 8959 true Chr1: 28979025-28987983 Arabidopsis thaliana
AT1G77140 5.0kb upstream 5.0kb upstream 5000 false Chr1: 28979025-28984024 Arabidopsis thaliana
AT1G77140 5.0kb downstream 5.0kb downstream 8959 true Chr1: 28984025-28992983 Arabidopsis thaliana
AT1G77140 5.0kb downstream 5.0kb downstream 5000 false Chr1: 28987984-28992983 Arabidopsis thaliana
AT1G77140 10.0kb upstream 10.0kb upstream 13959 true Chr1: 28974025-28987983 Arabidopsis thaliana
AT1G77140 10.0kb upstream 10.0kb upstream 10000 false Chr1: 28974025-28984024 Arabidopsis thaliana
AT1G77140 10.0kb downstream 10.0kb downstream 13959 true Chr1: 28984025-28997983 Arabidopsis thaliana
AT1G77140 10.0kb downstream 10.0kb downstream 10000 false Chr1: 28987984-28997983 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372340 5261 Brassicaceae View MSA
123830189 5264 Brassicales-Malvales View MSA
124339762 5266 SBM View MSA
124239986 5268 Malvidae View MSA
124069104 5270 Rosid View MSA
123737015 5271 Pentapetalae View MSA
122795036 5272 Eudicot View MSA
122044775 5273 Angiosperm View MSA
121347331 5274 Embryophyte View MSA
123424934 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.219        
cufflinks 8.118        
cufflinks 4.843       Low
cufflinks 8.69        
cufflinks 4.83       Low
cufflinks 9.657       High

0 Strain