Gene : PIN6 A. thaliana TAIR10
Primary Identifier:  ? AT1G77110 Defline:  (1 of 1) PTHR31752//PTHR31752:SF8 - FAMILY NOT NAMED // AUXIN EFFLUX CARRIER COMPONENT 6-RELATED
Genomic Order:  6680 Name:  ? AT1G77110
Secondary Identifier:  ? PAC:19651915
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G77110 0.5kb upstream 0.5kb upstream 4302 true Chr1: 28970302-28974603 Arabidopsis thaliana
AT1G77110 0.5kb upstream 0.5kb upstream 500 false Chr1: 28970302-28970801 Arabidopsis thaliana
AT1G77110 0.5kb downstream 0.5kb downstream 4302 true Chr1: 28970802-28975103 Arabidopsis thaliana
AT1G77110 0.5kb downstream 0.5kb downstream 500 false Chr1: 28974604-28975103 Arabidopsis thaliana
AT1G77110 1.0kb upstream 1.0kb upstream 4802 true Chr1: 28969802-28974603 Arabidopsis thaliana
AT1G77110 1.0kb upstream 1.0kb upstream 1000 false Chr1: 28969802-28970801 Arabidopsis thaliana
AT1G77110 1.0kb downstream 1.0kb downstream 4802 true Chr1: 28970802-28975603 Arabidopsis thaliana
AT1G77110 1.0kb downstream 1.0kb downstream 1000 false Chr1: 28974604-28975603 Arabidopsis thaliana
AT1G77110 2.0kb upstream 2.0kb upstream 5802 true Chr1: 28968802-28974603 Arabidopsis thaliana
AT1G77110 2.0kb upstream 2.0kb upstream 2000 false Chr1: 28968802-28970801 Arabidopsis thaliana
AT1G77110 2.0kb downstream 2.0kb downstream 5802 true Chr1: 28970802-28976603 Arabidopsis thaliana
AT1G77110 2.0kb downstream 2.0kb downstream 2000 false Chr1: 28974604-28976603 Arabidopsis thaliana
AT1G77110 5.0kb upstream 5.0kb upstream 8802 true Chr1: 28965802-28974603 Arabidopsis thaliana
AT1G77110 5.0kb upstream 5.0kb upstream 5000 false Chr1: 28965802-28970801 Arabidopsis thaliana
AT1G77110 5.0kb downstream 5.0kb downstream 8802 true Chr1: 28970802-28979603 Arabidopsis thaliana
AT1G77110 5.0kb downstream 5.0kb downstream 5000 false Chr1: 28974604-28979603 Arabidopsis thaliana
AT1G77110 10.0kb upstream 10.0kb upstream 13802 true Chr1: 28960802-28974603 Arabidopsis thaliana
AT1G77110 10.0kb upstream 10.0kb upstream 10000 false Chr1: 28960802-28970801 Arabidopsis thaliana
AT1G77110 10.0kb downstream 10.0kb downstream 13802 true Chr1: 28970802-28984603 Arabidopsis thaliana
AT1G77110 10.0kb downstream 10.0kb downstream 10000 false Chr1: 28974604-28984603 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372918 5261 Brassicaceae View MSA
123830142 5264 Brassicales-Malvales View MSA
124349829 5266 SBM View MSA
124250518 5268 Malvidae View MSA
124067962 5270 Rosid View MSA
123747841 5271 Pentapetalae View MSA
122796951 5272 Eudicot View MSA
122046141 5273 Angiosperm View MSA
121351759 5274 Embryophyte View MSA
123382310 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.655        
cufflinks 3.266        
cufflinks 0.648        
cufflinks 2.665        
cufflinks 0.446       Low
cufflinks 3.558       High

0 Strain