Gene : HMG1 A. thaliana TAIR10
Primary Identifier:  ? AT1G76490 Defline:  (1 of 1) PTHR10572//PTHR10572:SF9 - 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE // 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 1
Genomic Order:  6613 Name:  ? AT1G76490
Secondary Identifier:  ? PAC:19649404
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5910 Arabidopsis thaliana pathologic  
Athaliana PWY-922 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G76490 0.5kb upstream 0.5kb upstream 3534 true Chr1: 28695260-28698793 Arabidopsis thaliana
AT1G76490 0.5kb upstream 0.5kb upstream 500 false Chr1: 28695260-28695759 Arabidopsis thaliana
AT1G76490 0.5kb downstream 0.5kb downstream 3534 true Chr1: 28695760-28699293 Arabidopsis thaliana
AT1G76490 0.5kb downstream 0.5kb downstream 500 false Chr1: 28698794-28699293 Arabidopsis thaliana
AT1G76490 1.0kb upstream 1.0kb upstream 4034 true Chr1: 28694760-28698793 Arabidopsis thaliana
AT1G76490 1.0kb upstream 1.0kb upstream 1000 false Chr1: 28694760-28695759 Arabidopsis thaliana
AT1G76490 1.0kb downstream 1.0kb downstream 4034 true Chr1: 28695760-28699793 Arabidopsis thaliana
AT1G76490 1.0kb downstream 1.0kb downstream 1000 false Chr1: 28698794-28699793 Arabidopsis thaliana
AT1G76490 2.0kb upstream 2.0kb upstream 5034 true Chr1: 28693760-28698793 Arabidopsis thaliana
AT1G76490 2.0kb upstream 2.0kb upstream 2000 false Chr1: 28693760-28695759 Arabidopsis thaliana
AT1G76490 2.0kb downstream 2.0kb downstream 5034 true Chr1: 28695760-28700793 Arabidopsis thaliana
AT1G76490 2.0kb downstream 2.0kb downstream 2000 false Chr1: 28698794-28700793 Arabidopsis thaliana
AT1G76490 5.0kb upstream 5.0kb upstream 8034 true Chr1: 28690760-28698793 Arabidopsis thaliana
AT1G76490 5.0kb upstream 5.0kb upstream 5000 false Chr1: 28690760-28695759 Arabidopsis thaliana
AT1G76490 5.0kb downstream 5.0kb downstream 8034 true Chr1: 28695760-28703793 Arabidopsis thaliana
AT1G76490 5.0kb downstream 5.0kb downstream 5000 false Chr1: 28698794-28703793 Arabidopsis thaliana
AT1G76490 10.0kb upstream 10.0kb upstream 13034 true Chr1: 28685760-28698793 Arabidopsis thaliana
AT1G76490 10.0kb upstream 10.0kb upstream 10000 false Chr1: 28685760-28695759 Arabidopsis thaliana
AT1G76490 10.0kb downstream 10.0kb downstream 13034 true Chr1: 28695760-28708793 Arabidopsis thaliana
AT1G76490 10.0kb downstream 10.0kb downstream 10000 false Chr1: 28698794-28708793 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377721 5261 Brassicaceae View MSA
123840329 5264 Brassicales-Malvales View MSA
124347727 5266 SBM View MSA
124239533 5268 Malvidae View MSA
124072826 5270 Rosid View MSA
123751436 5271 Pentapetalae View MSA
122791870 5272 Eudicot View MSA
122051392 5273 Angiosperm View MSA
121350752 5274 Embryophyte View MSA
123381875 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 105.934     High  
cufflinks 90.05     High Low
cufflinks 113.051     High  
cufflinks 122.274     High  
cufflinks 124.942     High High
cufflinks 105.301     High  

0 Strain