Gene : AT1G33230 A. thaliana TAIR10
Defline:  (1 of 1) PTHR21433//PTHR21433:SF4 - TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA // SUBFAMILY NOT NAMED Genomic Order:  3285
Name:  ? AT1G33230 Secondary Identifier:  ? PAC:19651481
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G33230 0.5kb upstream 0.5kb upstream 3926 true Chr1: 12046141-12050066 Arabidopsis thaliana
AT1G33230 0.5kb upstream 0.5kb upstream 500 false Chr1: 12046141-12046640 Arabidopsis thaliana
AT1G33230 0.5kb downstream 0.5kb downstream 3926 true Chr1: 12046641-12050566 Arabidopsis thaliana
AT1G33230 0.5kb downstream 0.5kb downstream 500 false Chr1: 12050067-12050566 Arabidopsis thaliana
AT1G33230 1.0kb upstream 1.0kb upstream 4426 true Chr1: 12045641-12050066 Arabidopsis thaliana
AT1G33230 1.0kb upstream 1.0kb upstream 1000 false Chr1: 12045641-12046640 Arabidopsis thaliana
AT1G33230 1.0kb downstream 1.0kb downstream 4426 true Chr1: 12046641-12051066 Arabidopsis thaliana
AT1G33230 1.0kb downstream 1.0kb downstream 1000 false Chr1: 12050067-12051066 Arabidopsis thaliana
AT1G33230 2.0kb upstream 2.0kb upstream 5426 true Chr1: 12044641-12050066 Arabidopsis thaliana
AT1G33230 2.0kb upstream 2.0kb upstream 2000 false Chr1: 12044641-12046640 Arabidopsis thaliana
AT1G33230 2.0kb downstream 2.0kb downstream 5426 true Chr1: 12046641-12052066 Arabidopsis thaliana
AT1G33230 2.0kb downstream 2.0kb downstream 2000 false Chr1: 12050067-12052066 Arabidopsis thaliana
AT1G33230 5.0kb upstream 5.0kb upstream 8426 true Chr1: 12041641-12050066 Arabidopsis thaliana
AT1G33230 5.0kb upstream 5.0kb upstream 5000 false Chr1: 12041641-12046640 Arabidopsis thaliana
AT1G33230 5.0kb downstream 5.0kb downstream 8426 true Chr1: 12046641-12055066 Arabidopsis thaliana
AT1G33230 5.0kb downstream 5.0kb downstream 5000 false Chr1: 12050067-12055066 Arabidopsis thaliana
AT1G33230 10.0kb upstream 10.0kb upstream 13426 true Chr1: 12036641-12050066 Arabidopsis thaliana
AT1G33230 10.0kb upstream 10.0kb upstream 10000 false Chr1: 12036641-12046640 Arabidopsis thaliana
AT1G33230 10.0kb downstream 10.0kb downstream 13426 true Chr1: 12046641-12060066 Arabidopsis thaliana
AT1G33230 10.0kb downstream 10.0kb downstream 10000 false Chr1: 12050067-12060066 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361948 5261 Brassicaceae View MSA
123837614 5264 Brassicales-Malvales View MSA
124337122 5266 SBM View MSA
124251175 5268 Malvidae View MSA
124065114 5270 Rosid View MSA
123747288 5271 Pentapetalae View MSA
122787986 5272 Eudicot View MSA
122046309 5273 Angiosperm View MSA
121351059 5274 Embryophyte View MSA
123427435 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.032       Low
cufflinks 16.542        
cufflinks 9.94        
cufflinks 15.882        
cufflinks 10.549        
cufflinks 16.552        

0 Strain