Gene : LOL1 A. thaliana TAIR10
Primary Identifier:  ? AT1G32540 Defline:  (1 of 1) PTHR31747//PTHR31747:SF1 - FAMILY NOT NAMED // PROTEIN LOL1
Genomic Order:  3225 Name:  ? AT1G32540
Secondary Identifier:  ? PAC:19653409
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G32540 0.5kb upstream 0.5kb upstream 2895 true Chr1: 11767004-11769898 Arabidopsis thaliana
AT1G32540 0.5kb upstream 0.5kb upstream 500 false Chr1: 11767004-11767503 Arabidopsis thaliana
AT1G32540 0.5kb downstream 0.5kb downstream 2895 true Chr1: 11767504-11770398 Arabidopsis thaliana
AT1G32540 0.5kb downstream 0.5kb downstream 500 false Chr1: 11769899-11770398 Arabidopsis thaliana
AT1G32540 1.0kb upstream 1.0kb upstream 3395 true Chr1: 11766504-11769898 Arabidopsis thaliana
AT1G32540 1.0kb upstream 1.0kb upstream 1000 false Chr1: 11766504-11767503 Arabidopsis thaliana
AT1G32540 1.0kb downstream 1.0kb downstream 3395 true Chr1: 11767504-11770898 Arabidopsis thaliana
AT1G32540 1.0kb downstream 1.0kb downstream 1000 false Chr1: 11769899-11770898 Arabidopsis thaliana
AT1G32540 2.0kb upstream 2.0kb upstream 4395 true Chr1: 11765504-11769898 Arabidopsis thaliana
AT1G32540 2.0kb upstream 2.0kb upstream 2000 false Chr1: 11765504-11767503 Arabidopsis thaliana
AT1G32540 2.0kb downstream 2.0kb downstream 4395 true Chr1: 11767504-11771898 Arabidopsis thaliana
AT1G32540 2.0kb downstream 2.0kb downstream 2000 false Chr1: 11769899-11771898 Arabidopsis thaliana
AT1G32540 5.0kb upstream 5.0kb upstream 7395 true Chr1: 11762504-11769898 Arabidopsis thaliana
AT1G32540 5.0kb upstream 5.0kb upstream 5000 false Chr1: 11762504-11767503 Arabidopsis thaliana
AT1G32540 5.0kb downstream 5.0kb downstream 7395 true Chr1: 11767504-11774898 Arabidopsis thaliana
AT1G32540 5.0kb downstream 5.0kb downstream 5000 false Chr1: 11769899-11774898 Arabidopsis thaliana
AT1G32540 10.0kb upstream 10.0kb upstream 12395 true Chr1: 11757504-11769898 Arabidopsis thaliana
AT1G32540 10.0kb upstream 10.0kb upstream 10000 false Chr1: 11757504-11767503 Arabidopsis thaliana
AT1G32540 10.0kb downstream 10.0kb downstream 12395 true Chr1: 11767504-11779898 Arabidopsis thaliana
AT1G32540 10.0kb downstream 10.0kb downstream 10000 false Chr1: 11769899-11779898 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122328665 5261 Brassicaceae Singleton cluster - no MSA
123770006 5264 Brassicales-Malvales Singleton cluster - no MSA
124268556 5266 SBM Singleton cluster - no MSA
124247932 5268 Malvidae View MSA
124064125 5270 Rosid View MSA
123749218 5271 Pentapetalae View MSA
122793241 5272 Eudicot View MSA
122043941 5273 Angiosperm View MSA
121347680 5274 Embryophyte View MSA
123425652 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.897        
cufflinks 0.7        
cufflinks 8.459       High
cufflinks 0.969        
cufflinks 7.868       High
cufflinks 0.296     Low Low

0 Strain