Gene : AT1G31430 A. thaliana TAIR10
Defline:  (1 of 32) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  3114
Name:  ? AT1G31430 Secondary Identifier:  ? PAC:19649571
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G31430 0.5kb upstream 0.5kb upstream 2302 true Chr1: 11253936-11256237 Arabidopsis thaliana
AT1G31430 0.5kb upstream 0.5kb upstream 500 false Chr1: 11255738-11256237 Arabidopsis thaliana
AT1G31430 0.5kb downstream 0.5kb downstream 2302 true Chr1: 11253436-11255737 Arabidopsis thaliana
AT1G31430 0.5kb downstream 0.5kb downstream 500 false Chr1: 11253436-11253935 Arabidopsis thaliana
AT1G31430 1.0kb upstream 1.0kb upstream 2802 true Chr1: 11253936-11256737 Arabidopsis thaliana
AT1G31430 1.0kb upstream 1.0kb upstream 1000 false Chr1: 11255738-11256737 Arabidopsis thaliana
AT1G31430 1.0kb downstream 1.0kb downstream 2802 true Chr1: 11252936-11255737 Arabidopsis thaliana
AT1G31430 1.0kb downstream 1.0kb downstream 1000 false Chr1: 11252936-11253935 Arabidopsis thaliana
AT1G31430 2.0kb upstream 2.0kb upstream 3802 true Chr1: 11253936-11257737 Arabidopsis thaliana
AT1G31430 2.0kb upstream 2.0kb upstream 2000 false Chr1: 11255738-11257737 Arabidopsis thaliana
AT1G31430 2.0kb downstream 2.0kb downstream 3802 true Chr1: 11251936-11255737 Arabidopsis thaliana
AT1G31430 2.0kb downstream 2.0kb downstream 2000 false Chr1: 11251936-11253935 Arabidopsis thaliana
AT1G31430 5.0kb upstream 5.0kb upstream 6802 true Chr1: 11253936-11260737 Arabidopsis thaliana
AT1G31430 5.0kb upstream 5.0kb upstream 5000 false Chr1: 11255738-11260737 Arabidopsis thaliana
AT1G31430 5.0kb downstream 5.0kb downstream 6802 true Chr1: 11248936-11255737 Arabidopsis thaliana
AT1G31430 5.0kb downstream 5.0kb downstream 5000 false Chr1: 11248936-11253935 Arabidopsis thaliana
AT1G31430 10.0kb upstream 10.0kb upstream 11802 true Chr1: 11253936-11265737 Arabidopsis thaliana
AT1G31430 10.0kb upstream 10.0kb upstream 10000 false Chr1: 11255738-11265737 Arabidopsis thaliana
AT1G31430 10.0kb downstream 10.0kb downstream 11802 true Chr1: 11243936-11255737 Arabidopsis thaliana
AT1G31430 10.0kb downstream 10.0kb downstream 10000 false Chr1: 11243936-11253935 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361084 5261 Brassicaceae View MSA
123832959 5264 Brassicales-Malvales View MSA
124336880 5266 SBM View MSA
124252297 5268 Malvidae View MSA
124072628 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.328       High
cufflinks 0.791        
cufflinks 0.861        
cufflinks 0.826        
cufflinks 0.732        
cufflinks 0.666        

0 Strain