Gene : AT1G29520 A. thaliana TAIR10
Defline:  (1 of 9) 3.2.1.78 - Mannan endo-1,4-beta-mannosidase / Endo-1,4-mannanase Genomic Order:  2918
Name:  ? AT1G29520 Secondary Identifier:  ? PAC:19657269
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G29520 0.5kb upstream 0.5kb upstream 1589 true Chr1: 10323155-10324743 Arabidopsis thaliana
AT1G29520 0.5kb upstream 0.5kb upstream 500 false Chr1: 10323155-10323654 Arabidopsis thaliana
AT1G29520 0.5kb downstream 0.5kb downstream 1589 true Chr1: 10323655-10325243 Arabidopsis thaliana
AT1G29520 0.5kb downstream 0.5kb downstream 500 false Chr1: 10324744-10325243 Arabidopsis thaliana
AT1G29520 1.0kb upstream 1.0kb upstream 2089 true Chr1: 10322655-10324743 Arabidopsis thaliana
AT1G29520 1.0kb upstream 1.0kb upstream 1000 false Chr1: 10322655-10323654 Arabidopsis thaliana
AT1G29520 1.0kb downstream 1.0kb downstream 2089 true Chr1: 10323655-10325743 Arabidopsis thaliana
AT1G29520 1.0kb downstream 1.0kb downstream 1000 false Chr1: 10324744-10325743 Arabidopsis thaliana
AT1G29520 2.0kb upstream 2.0kb upstream 3089 true Chr1: 10321655-10324743 Arabidopsis thaliana
AT1G29520 2.0kb upstream 2.0kb upstream 2000 false Chr1: 10321655-10323654 Arabidopsis thaliana
AT1G29520 2.0kb downstream 2.0kb downstream 3089 true Chr1: 10323655-10326743 Arabidopsis thaliana
AT1G29520 2.0kb downstream 2.0kb downstream 2000 false Chr1: 10324744-10326743 Arabidopsis thaliana
AT1G29520 5.0kb upstream 5.0kb upstream 6089 true Chr1: 10318655-10324743 Arabidopsis thaliana
AT1G29520 5.0kb upstream 5.0kb upstream 5000 false Chr1: 10318655-10323654 Arabidopsis thaliana
AT1G29520 5.0kb downstream 5.0kb downstream 6089 true Chr1: 10323655-10329743 Arabidopsis thaliana
AT1G29520 5.0kb downstream 5.0kb downstream 5000 false Chr1: 10324744-10329743 Arabidopsis thaliana
AT1G29520 10.0kb upstream 10.0kb upstream 11089 true Chr1: 10313655-10324743 Arabidopsis thaliana
AT1G29520 10.0kb upstream 10.0kb upstream 10000 false Chr1: 10313655-10323654 Arabidopsis thaliana
AT1G29520 10.0kb downstream 10.0kb downstream 11089 true Chr1: 10323655-10334743 Arabidopsis thaliana
AT1G29520 10.0kb downstream 10.0kb downstream 10000 false Chr1: 10324744-10334743 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369520 5261 Brassicaceae View MSA
123833266 5264 Brassicales-Malvales View MSA
124343534 5266 SBM View MSA
124252721 5268 Malvidae View MSA
124067384 5270 Rosid View MSA
123740214 5271 Pentapetalae View MSA
122788901 5272 Eudicot View MSA
122050396 5273 Angiosperm View MSA
121349282 5274 Embryophyte View MSA
123381254 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.752        
cufflinks 58.42     High  
cufflinks 5.868        
cufflinks 49.457     High  
cufflinks 3.665       Low
cufflinks 57.682     High  

0 Strain