Gene : IRX9-L A. thaliana TAIR10
Primary Identifier:  ? AT1G27600 Defline:  (1 of 1) PTHR10896//PTHR10896:SF20 - GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE // GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE I
Genomic Order:  2739 Name:  ? AT1G27600
Secondary Identifier:  ? PAC:19655699
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5800 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G27600 0.5kb upstream 0.5kb upstream 3424 true Chr1: 9603178-9606601 Arabidopsis thaliana
AT1G27600 0.5kb upstream 0.5kb upstream 500 false Chr1: 9606102-9606601 Arabidopsis thaliana
AT1G27600 0.5kb downstream 0.5kb downstream 3424 true Chr1: 9602678-9606101 Arabidopsis thaliana
AT1G27600 0.5kb downstream 0.5kb downstream 500 false Chr1: 9602678-9603177 Arabidopsis thaliana
AT1G27600 1.0kb upstream 1.0kb upstream 3924 true Chr1: 9603178-9607101 Arabidopsis thaliana
AT1G27600 1.0kb upstream 1.0kb upstream 1000 false Chr1: 9606102-9607101 Arabidopsis thaliana
AT1G27600 1.0kb downstream 1.0kb downstream 3924 true Chr1: 9602178-9606101 Arabidopsis thaliana
AT1G27600 1.0kb downstream 1.0kb downstream 1000 false Chr1: 9602178-9603177 Arabidopsis thaliana
AT1G27600 2.0kb upstream 2.0kb upstream 4924 true Chr1: 9603178-9608101 Arabidopsis thaliana
AT1G27600 2.0kb upstream 2.0kb upstream 2000 false Chr1: 9606102-9608101 Arabidopsis thaliana
AT1G27600 2.0kb downstream 2.0kb downstream 4924 true Chr1: 9601178-9606101 Arabidopsis thaliana
AT1G27600 2.0kb downstream 2.0kb downstream 2000 false Chr1: 9601178-9603177 Arabidopsis thaliana
AT1G27600 5.0kb upstream 5.0kb upstream 7924 true Chr1: 9603178-9611101 Arabidopsis thaliana
AT1G27600 5.0kb upstream 5.0kb upstream 5000 false Chr1: 9606102-9611101 Arabidopsis thaliana
AT1G27600 5.0kb downstream 5.0kb downstream 7924 true Chr1: 9598178-9606101 Arabidopsis thaliana
AT1G27600 5.0kb downstream 5.0kb downstream 5000 false Chr1: 9598178-9603177 Arabidopsis thaliana
AT1G27600 10.0kb upstream 10.0kb upstream 12924 true Chr1: 9603178-9616101 Arabidopsis thaliana
AT1G27600 10.0kb upstream 10.0kb upstream 10000 false Chr1: 9606102-9616101 Arabidopsis thaliana
AT1G27600 10.0kb downstream 10.0kb downstream 12924 true Chr1: 9593178-9606101 Arabidopsis thaliana
AT1G27600 10.0kb downstream 10.0kb downstream 10000 false Chr1: 9593178-9603177 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372036 5261 Brassicaceae View MSA
123829851 5264 Brassicales-Malvales View MSA
124351012 5266 SBM View MSA
124252838 5268 Malvidae View MSA
124065627 5270 Rosid View MSA
123748669 5271 Pentapetalae View MSA
122794067 5272 Eudicot View MSA
122050395 5273 Angiosperm View MSA
121346281 5274 Embryophyte View MSA
123380360 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.568        
cufflinks 7.076        
cufflinks 6.13       Low
cufflinks 7.794        
cufflinks 6.873        
cufflinks 7.673        

0 Strain