Gene : TLP7 A. thaliana TAIR10
Primary Identifier:  ? AT1G53320 Defline:  (1 of 11) PTHR16517 - TUBBY-RELATED
Genomic Order:  4371 Name:  ? AT1G53320
Secondary Identifier:  ? PAC:19656308
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G53320 0.5kb upstream 0.5kb upstream 2991 true Chr1: 19891014-19894004 Arabidopsis thaliana
AT1G53320 0.5kb upstream 0.5kb upstream 500 false Chr1: 19893505-19894004 Arabidopsis thaliana
AT1G53320 0.5kb downstream 0.5kb downstream 2991 true Chr1: 19890514-19893504 Arabidopsis thaliana
AT1G53320 0.5kb downstream 0.5kb downstream 500 false Chr1: 19890514-19891013 Arabidopsis thaliana
AT1G53320 1.0kb upstream 1.0kb upstream 3491 true Chr1: 19891014-19894504 Arabidopsis thaliana
AT1G53320 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19893505-19894504 Arabidopsis thaliana
AT1G53320 1.0kb downstream 1.0kb downstream 3491 true Chr1: 19890014-19893504 Arabidopsis thaliana
AT1G53320 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19890014-19891013 Arabidopsis thaliana
AT1G53320 2.0kb upstream 2.0kb upstream 4491 true Chr1: 19891014-19895504 Arabidopsis thaliana
AT1G53320 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19893505-19895504 Arabidopsis thaliana
AT1G53320 2.0kb downstream 2.0kb downstream 4491 true Chr1: 19889014-19893504 Arabidopsis thaliana
AT1G53320 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19889014-19891013 Arabidopsis thaliana
AT1G53320 5.0kb upstream 5.0kb upstream 7491 true Chr1: 19891014-19898504 Arabidopsis thaliana
AT1G53320 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19893505-19898504 Arabidopsis thaliana
AT1G53320 5.0kb downstream 5.0kb downstream 7491 true Chr1: 19886014-19893504 Arabidopsis thaliana
AT1G53320 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19886014-19891013 Arabidopsis thaliana
AT1G53320 10.0kb upstream 10.0kb upstream 12491 true Chr1: 19891014-19903504 Arabidopsis thaliana
AT1G53320 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19893505-19903504 Arabidopsis thaliana
AT1G53320 10.0kb downstream 10.0kb downstream 12491 true Chr1: 19881014-19893504 Arabidopsis thaliana
AT1G53320 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19881014-19891013 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374796 5261 Brassicaceae View MSA
123837485 5264 Brassicales-Malvales View MSA
124337120 5266 SBM View MSA
124253064 5268 Malvidae View MSA
124061146 5270 Rosid View MSA
123740168 5271 Pentapetalae View MSA
122785762 5272 Eudicot View MSA
122045291 5273 Angiosperm View MSA
123429062 5275 Viridiplantae View MSA
121310429 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.686       Low
cufflinks 29.58     High  
cufflinks 21.254        
cufflinks 29.784        
cufflinks 27.9     High  
cufflinks 22.913        

0 Strain