Gene : AT1G52910 A. thaliana TAIR10
Defline:  (1 of 15) PF06749 - Protein of unknown function (DUF1218) (DUF1218) Genomic Order:  4325
Name:  ? AT1G52910 Secondary Identifier:  ? PAC:19653550
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G52910 0.5kb upstream 0.5kb upstream 1767 true Chr1: 19707557-19709323 Arabidopsis thaliana
AT1G52910 0.5kb upstream 0.5kb upstream 500 false Chr1: 19707557-19708056 Arabidopsis thaliana
AT1G52910 0.5kb downstream 0.5kb downstream 1767 true Chr1: 19708057-19709823 Arabidopsis thaliana
AT1G52910 0.5kb downstream 0.5kb downstream 500 false Chr1: 19709324-19709823 Arabidopsis thaliana
AT1G52910 1.0kb upstream 1.0kb upstream 2267 true Chr1: 19707057-19709323 Arabidopsis thaliana
AT1G52910 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19707057-19708056 Arabidopsis thaliana
AT1G52910 1.0kb downstream 1.0kb downstream 2267 true Chr1: 19708057-19710323 Arabidopsis thaliana
AT1G52910 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19709324-19710323 Arabidopsis thaliana
AT1G52910 2.0kb upstream 2.0kb upstream 3267 true Chr1: 19706057-19709323 Arabidopsis thaliana
AT1G52910 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19706057-19708056 Arabidopsis thaliana
AT1G52910 2.0kb downstream 2.0kb downstream 3267 true Chr1: 19708057-19711323 Arabidopsis thaliana
AT1G52910 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19709324-19711323 Arabidopsis thaliana
AT1G52910 5.0kb upstream 5.0kb upstream 6267 true Chr1: 19703057-19709323 Arabidopsis thaliana
AT1G52910 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19703057-19708056 Arabidopsis thaliana
AT1G52910 5.0kb downstream 5.0kb downstream 6267 true Chr1: 19708057-19714323 Arabidopsis thaliana
AT1G52910 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19709324-19714323 Arabidopsis thaliana
AT1G52910 10.0kb upstream 10.0kb upstream 11267 true Chr1: 19698057-19709323 Arabidopsis thaliana
AT1G52910 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19698057-19708056 Arabidopsis thaliana
AT1G52910 10.0kb downstream 10.0kb downstream 11267 true Chr1: 19708057-19719323 Arabidopsis thaliana
AT1G52910 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19709324-19719323 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041273 5273 Angiosperm View MSA
122379003 5261 Brassicaceae View MSA
123802062 5264 Brassicales-Malvales View MSA
124299285 5266 SBM View MSA
124250780 5268 Malvidae View MSA
124066050 5270 Rosid View MSA
123742828 5271 Pentapetalae View MSA
122791764 5272 Eudicot View MSA
121349405 5274 Embryophyte View MSA
123381298 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.543        
cufflinks 6.982        
cufflinks 2.003       Low
cufflinks 8.31        
cufflinks 1.825       Low
cufflinks 8.878       High

0 Strain