Gene : mMDH1 A. thaliana TAIR10
Primary Identifier:  ? AT1G53240 Defline:  (1 of 5) K00026 - malate dehydrogenase (MDH2)
Genomic Order:  4360 Name:  ? AT1G53240
Secondary Identifier:  ? PAC:19654695
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana GLUCONEO-PWY Arabidopsis thaliana pathologic  
Athaliana GLYOXYLATE-BYPASS Arabidopsis thaliana pathologic  
Athaliana PWY-5464 Arabidopsis thaliana pathologic  
Athaliana PWY-561 Arabidopsis thaliana pathologic  
Athaliana PWY-5690 Arabidopsis thaliana pathologic  
Athaliana PWY66-399 Arabidopsis thaliana pathologic  
Athaliana PWY-7115 Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G53240 0.5kb upstream 0.5kb upstream 2823 true Chr1: 19854615-19857437 Arabidopsis thaliana
AT1G53240 0.5kb upstream 0.5kb upstream 500 false Chr1: 19856938-19857437 Arabidopsis thaliana
AT1G53240 0.5kb downstream 0.5kb downstream 2823 true Chr1: 19854115-19856937 Arabidopsis thaliana
AT1G53240 0.5kb downstream 0.5kb downstream 500 false Chr1: 19854115-19854614 Arabidopsis thaliana
AT1G53240 1.0kb upstream 1.0kb upstream 3323 true Chr1: 19854615-19857937 Arabidopsis thaliana
AT1G53240 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19856938-19857937 Arabidopsis thaliana
AT1G53240 1.0kb downstream 1.0kb downstream 3323 true Chr1: 19853615-19856937 Arabidopsis thaliana
AT1G53240 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19853615-19854614 Arabidopsis thaliana
AT1G53240 2.0kb upstream 2.0kb upstream 4323 true Chr1: 19854615-19858937 Arabidopsis thaliana
AT1G53240 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19856938-19858937 Arabidopsis thaliana
AT1G53240 2.0kb downstream 2.0kb downstream 4323 true Chr1: 19852615-19856937 Arabidopsis thaliana
AT1G53240 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19852615-19854614 Arabidopsis thaliana
AT1G53240 5.0kb upstream 5.0kb upstream 7323 true Chr1: 19854615-19861937 Arabidopsis thaliana
AT1G53240 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19856938-19861937 Arabidopsis thaliana
AT1G53240 5.0kb downstream 5.0kb downstream 7323 true Chr1: 19849615-19856937 Arabidopsis thaliana
AT1G53240 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19849615-19854614 Arabidopsis thaliana
AT1G53240 10.0kb upstream 10.0kb upstream 12323 true Chr1: 19854615-19866937 Arabidopsis thaliana
AT1G53240 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19856938-19866937 Arabidopsis thaliana
AT1G53240 10.0kb downstream 10.0kb downstream 12323 true Chr1: 19844615-19856937 Arabidopsis thaliana
AT1G53240 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19844615-19854614 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375905 5261 Brassicaceae View MSA
123840380 5264 Brassicales-Malvales View MSA
124342947 5266 SBM View MSA
124249329 5268 Malvidae View MSA
124072115 5270 Rosid View MSA
123744980 5271 Pentapetalae View MSA
122794194 5272 Eudicot View MSA
122042635 5273 Angiosperm View MSA
121345492 5274 Embryophyte View MSA
123423974 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 82.395     High  
cufflinks 75.801     High  
cufflinks 105.064     High High
cufflinks 83.708     High  
cufflinks 76.198     High  
cufflinks 97.291     High  

0 Strain