Gene : AT1G52870 A. thaliana TAIR10
Defline:  (1 of 2) PTHR11266:SF16 - PEROXISOMAL MEMBRANE (MPV17/PMP22) FAMILY PROTEIN Genomic Order:  4320
Name:  ? AT1G52870 Secondary Identifier:  ? PAC:19654011
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G52870 0.5kb upstream 0.5kb upstream 2663 true Chr1: 19685245-19687907 Arabidopsis thaliana
AT1G52870 0.5kb upstream 0.5kb upstream 500 false Chr1: 19685245-19685744 Arabidopsis thaliana
AT1G52870 0.5kb downstream 0.5kb downstream 2663 true Chr1: 19685745-19688407 Arabidopsis thaliana
AT1G52870 0.5kb downstream 0.5kb downstream 500 false Chr1: 19687908-19688407 Arabidopsis thaliana
AT1G52870 1.0kb upstream 1.0kb upstream 3163 true Chr1: 19684745-19687907 Arabidopsis thaliana
AT1G52870 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19684745-19685744 Arabidopsis thaliana
AT1G52870 1.0kb downstream 1.0kb downstream 3163 true Chr1: 19685745-19688907 Arabidopsis thaliana
AT1G52870 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19687908-19688907 Arabidopsis thaliana
AT1G52870 2.0kb upstream 2.0kb upstream 4163 true Chr1: 19683745-19687907 Arabidopsis thaliana
AT1G52870 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19683745-19685744 Arabidopsis thaliana
AT1G52870 2.0kb downstream 2.0kb downstream 4163 true Chr1: 19685745-19689907 Arabidopsis thaliana
AT1G52870 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19687908-19689907 Arabidopsis thaliana
AT1G52870 5.0kb upstream 5.0kb upstream 7163 true Chr1: 19680745-19687907 Arabidopsis thaliana
AT1G52870 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19680745-19685744 Arabidopsis thaliana
AT1G52870 5.0kb downstream 5.0kb downstream 7163 true Chr1: 19685745-19692907 Arabidopsis thaliana
AT1G52870 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19687908-19692907 Arabidopsis thaliana
AT1G52870 10.0kb upstream 10.0kb upstream 12163 true Chr1: 19675745-19687907 Arabidopsis thaliana
AT1G52870 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19675745-19685744 Arabidopsis thaliana
AT1G52870 10.0kb downstream 10.0kb downstream 12163 true Chr1: 19685745-19697907 Arabidopsis thaliana
AT1G52870 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19687908-19697907 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372194 5261 Brassicaceae View MSA
123833714 5264 Brassicales-Malvales View MSA
124339331 5266 SBM View MSA
124249580 5268 Malvidae View MSA
124069878 5270 Rosid View MSA
123741697 5271 Pentapetalae View MSA
122796269 5272 Eudicot View MSA
122044681 5273 Angiosperm View MSA
121345710 5274 Embryophyte View MSA
123428334 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 39.781     High  
cufflinks 0.318     Low  
cufflinks 35.898     High  
cufflinks 0.433        
cufflinks 50.699     High  
cufflinks 0.151     Low Low

0 Strain