Gene : IAA6 A. thaliana TAIR10
Primary Identifier:  ? AT1G52830 Defline:  (1 of 3) PTHR31734:SF12 - AUXIN-RESPONSIVE PROTEIN IAA19-RELATED
Genomic Order:  4317 Name:  ? AT1G52830
Secondary Identifier:  ? PAC:19650663
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G52830 0.5kb upstream 0.5kb upstream 1649 true Chr1: 19672496-19674144 Arabidopsis thaliana
AT1G52830 0.5kb upstream 0.5kb upstream 500 false Chr1: 19673645-19674144 Arabidopsis thaliana
AT1G52830 0.5kb downstream 0.5kb downstream 1649 true Chr1: 19671996-19673644 Arabidopsis thaliana
AT1G52830 0.5kb downstream 0.5kb downstream 500 false Chr1: 19671996-19672495 Arabidopsis thaliana
AT1G52830 1.0kb upstream 1.0kb upstream 2149 true Chr1: 19672496-19674644 Arabidopsis thaliana
AT1G52830 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19673645-19674644 Arabidopsis thaliana
AT1G52830 1.0kb downstream 1.0kb downstream 2149 true Chr1: 19671496-19673644 Arabidopsis thaliana
AT1G52830 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19671496-19672495 Arabidopsis thaliana
AT1G52830 2.0kb upstream 2.0kb upstream 3149 true Chr1: 19672496-19675644 Arabidopsis thaliana
AT1G52830 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19673645-19675644 Arabidopsis thaliana
AT1G52830 2.0kb downstream 2.0kb downstream 3149 true Chr1: 19670496-19673644 Arabidopsis thaliana
AT1G52830 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19670496-19672495 Arabidopsis thaliana
AT1G52830 5.0kb upstream 5.0kb upstream 6149 true Chr1: 19672496-19678644 Arabidopsis thaliana
AT1G52830 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19673645-19678644 Arabidopsis thaliana
AT1G52830 5.0kb downstream 5.0kb downstream 6149 true Chr1: 19667496-19673644 Arabidopsis thaliana
AT1G52830 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19667496-19672495 Arabidopsis thaliana
AT1G52830 10.0kb upstream 10.0kb upstream 11149 true Chr1: 19672496-19683644 Arabidopsis thaliana
AT1G52830 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19673645-19683644 Arabidopsis thaliana
AT1G52830 10.0kb downstream 10.0kb downstream 11149 true Chr1: 19662496-19673644 Arabidopsis thaliana
AT1G52830 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19662496-19672495 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381170 5261 Brassicaceae View MSA
123803096 5264 Brassicales-Malvales View MSA
124300231 5266 SBM View MSA
124151462 5268 Malvidae View MSA
124060642 5270 Rosid View MSA
123747255 5271 Pentapetalae View MSA
122788195 5272 Eudicot View MSA
122050292 5273 Angiosperm View MSA
121311842 5274 Embryophyte View MSA
123349083 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.401       High
cufflinks 1.042       Low
cufflinks 2.291        
cufflinks 1.451        
cufflinks 1.315        
cufflinks 1.66        

0 Strain