Gene : AT1G52700 A. thaliana TAIR10
Defline:  (1 of 5) 3.1.1.5 - Lysophospholipase / Phospholipase B Genomic Order:  4302
Name:  ? AT1G52700 Secondary Identifier:  ? PAC:19652274
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7409 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G52700 0.5kb upstream 0.5kb upstream 2815 true Chr1: 19631126-19633940 Arabidopsis thaliana
AT1G52700 0.5kb upstream 0.5kb upstream 500 false Chr1: 19633441-19633940 Arabidopsis thaliana
AT1G52700 0.5kb downstream 0.5kb downstream 2815 true Chr1: 19630626-19633440 Arabidopsis thaliana
AT1G52700 0.5kb downstream 0.5kb downstream 500 false Chr1: 19630626-19631125 Arabidopsis thaliana
AT1G52700 1.0kb upstream 1.0kb upstream 3315 true Chr1: 19631126-19634440 Arabidopsis thaliana
AT1G52700 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19633441-19634440 Arabidopsis thaliana
AT1G52700 1.0kb downstream 1.0kb downstream 3315 true Chr1: 19630126-19633440 Arabidopsis thaliana
AT1G52700 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19630126-19631125 Arabidopsis thaliana
AT1G52700 2.0kb upstream 2.0kb upstream 4315 true Chr1: 19631126-19635440 Arabidopsis thaliana
AT1G52700 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19633441-19635440 Arabidopsis thaliana
AT1G52700 2.0kb downstream 2.0kb downstream 4315 true Chr1: 19629126-19633440 Arabidopsis thaliana
AT1G52700 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19629126-19631125 Arabidopsis thaliana
AT1G52700 5.0kb upstream 5.0kb upstream 7315 true Chr1: 19631126-19638440 Arabidopsis thaliana
AT1G52700 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19633441-19638440 Arabidopsis thaliana
AT1G52700 5.0kb downstream 5.0kb downstream 7315 true Chr1: 19626126-19633440 Arabidopsis thaliana
AT1G52700 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19626126-19631125 Arabidopsis thaliana
AT1G52700 10.0kb upstream 10.0kb upstream 12315 true Chr1: 19631126-19643440 Arabidopsis thaliana
AT1G52700 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19633441-19643440 Arabidopsis thaliana
AT1G52700 10.0kb downstream 10.0kb downstream 12315 true Chr1: 19621126-19633440 Arabidopsis thaliana
AT1G52700 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19621126-19631125 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380548 5261 Brassicaceae View MSA
123836615 5264 Brassicales-Malvales View MSA
124338971 5266 SBM View MSA
124245146 5268 Malvidae View MSA
124070848 5270 Rosid View MSA
123747021 5271 Pentapetalae View MSA
122795492 5272 Eudicot View MSA
122046747 5273 Angiosperm View MSA
121349351 5274 Embryophyte View MSA
123428773 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.964        
cufflinks 6.222       High
cufflinks 1.132        
cufflinks 3.582        
cufflinks 0.448       Low
cufflinks 4.679        

0 Strain