Gene : AT1G50970 A. thaliana TAIR10
Defline:  (1 of 2) PTHR12820:SF0 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 53 HOMOLOG Genomic Order:  4119
Name:  ? AT1G50970 Secondary Identifier:  ? PAC:19655340
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G50970 0.5kb upstream 0.5kb upstream 4446 true Chr1: 18895823-18900268 Arabidopsis thaliana
AT1G50970 0.5kb upstream 0.5kb upstream 500 false Chr1: 18895823-18896322 Arabidopsis thaliana
AT1G50970 0.5kb downstream 0.5kb downstream 4446 true Chr1: 18896323-18900768 Arabidopsis thaliana
AT1G50970 0.5kb downstream 0.5kb downstream 500 false Chr1: 18900269-18900768 Arabidopsis thaliana
AT1G50970 1.0kb upstream 1.0kb upstream 4946 true Chr1: 18895323-18900268 Arabidopsis thaliana
AT1G50970 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18895323-18896322 Arabidopsis thaliana
AT1G50970 1.0kb downstream 1.0kb downstream 4946 true Chr1: 18896323-18901268 Arabidopsis thaliana
AT1G50970 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18900269-18901268 Arabidopsis thaliana
AT1G50970 2.0kb upstream 2.0kb upstream 5946 true Chr1: 18894323-18900268 Arabidopsis thaliana
AT1G50970 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18894323-18896322 Arabidopsis thaliana
AT1G50970 2.0kb downstream 2.0kb downstream 5946 true Chr1: 18896323-18902268 Arabidopsis thaliana
AT1G50970 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18900269-18902268 Arabidopsis thaliana
AT1G50970 5.0kb upstream 5.0kb upstream 8946 true Chr1: 18891323-18900268 Arabidopsis thaliana
AT1G50970 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18891323-18896322 Arabidopsis thaliana
AT1G50970 5.0kb downstream 5.0kb downstream 8946 true Chr1: 18896323-18905268 Arabidopsis thaliana
AT1G50970 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18900269-18905268 Arabidopsis thaliana
AT1G50970 10.0kb upstream 10.0kb upstream 13946 true Chr1: 18886323-18900268 Arabidopsis thaliana
AT1G50970 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18886323-18896322 Arabidopsis thaliana
AT1G50970 10.0kb downstream 10.0kb downstream 13946 true Chr1: 18896323-18910268 Arabidopsis thaliana
AT1G50970 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18900269-18910268 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122328842 5261 Brassicaceae Singleton cluster - no MSA
123770175 5264 Brassicales-Malvales Singleton cluster - no MSA
124349969 5266 SBM View MSA
124237123 5268 Malvidae View MSA
124060785 5270 Rosid View MSA
123745504 5271 Pentapetalae View MSA
122792209 5272 Eudicot View MSA
122042616 5273 Angiosperm View MSA
121345322 5274 Embryophyte View MSA
123426739 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.865        
cufflinks 14.788       High
cufflinks 4.478        
cufflinks 12.515        
cufflinks 3.822       Low
cufflinks 10.716        

0 Strain