Gene : AT1G50280 A. thaliana TAIR10
Defline:  (1 of 33) PF03000 - NPH3 family (NPH3) Genomic Order:  4050
Name:  ? AT1G50280 Secondary Identifier:  ? PAC:19658109
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G50280 0.5kb upstream 0.5kb upstream 3198 true Chr1: 18623698-18626895 Arabidopsis thaliana
AT1G50280 0.5kb upstream 0.5kb upstream 500 false Chr1: 18626396-18626895 Arabidopsis thaliana
AT1G50280 0.5kb downstream 0.5kb downstream 3198 true Chr1: 18623198-18626395 Arabidopsis thaliana
AT1G50280 0.5kb downstream 0.5kb downstream 500 false Chr1: 18623198-18623697 Arabidopsis thaliana
AT1G50280 1.0kb upstream 1.0kb upstream 3698 true Chr1: 18623698-18627395 Arabidopsis thaliana
AT1G50280 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18626396-18627395 Arabidopsis thaliana
AT1G50280 1.0kb downstream 1.0kb downstream 3698 true Chr1: 18622698-18626395 Arabidopsis thaliana
AT1G50280 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18622698-18623697 Arabidopsis thaliana
AT1G50280 2.0kb upstream 2.0kb upstream 4698 true Chr1: 18623698-18628395 Arabidopsis thaliana
AT1G50280 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18626396-18628395 Arabidopsis thaliana
AT1G50280 2.0kb downstream 2.0kb downstream 4698 true Chr1: 18621698-18626395 Arabidopsis thaliana
AT1G50280 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18621698-18623697 Arabidopsis thaliana
AT1G50280 5.0kb upstream 5.0kb upstream 7698 true Chr1: 18623698-18631395 Arabidopsis thaliana
AT1G50280 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18626396-18631395 Arabidopsis thaliana
AT1G50280 5.0kb downstream 5.0kb downstream 7698 true Chr1: 18618698-18626395 Arabidopsis thaliana
AT1G50280 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18618698-18623697 Arabidopsis thaliana
AT1G50280 10.0kb upstream 10.0kb upstream 12698 true Chr1: 18623698-18636395 Arabidopsis thaliana
AT1G50280 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18626396-18636395 Arabidopsis thaliana
AT1G50280 10.0kb downstream 10.0kb downstream 12698 true Chr1: 18613698-18626395 Arabidopsis thaliana
AT1G50280 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18613698-18623697 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369848 5261 Brassicaceae View MSA
123799855 5264 Brassicales-Malvales View MSA
124297336 5266 SBM View MSA
124247811 5268 Malvidae View MSA
124071216 5270 Rosid View MSA
123750783 5271 Pentapetalae View MSA
122794459 5272 Eudicot View MSA
122048386 5273 Angiosperm View MSA
121349864 5274 Embryophyte View MSA
123381475 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.185       High
cufflinks 1.891        
cufflinks 3.574        
cufflinks 1.148       Low
cufflinks 2.451        
cufflinks 1.691        

0 Strain