Gene : AT1G49520 A. thaliana TAIR10
Defline:  (1 of 3) K15223 - upstream activation factor subunit UAF30 (UAF30, SPP27) Genomic Order:  3979
Name:  ? AT1G49520 Secondary Identifier:  ? PAC:19652550
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G49520 0.5kb upstream 0.5kb upstream 2674 true Chr1: 18329196-18331869 Arabidopsis thaliana
AT1G49520 0.5kb upstream 0.5kb upstream 500 false Chr1: 18329196-18329695 Arabidopsis thaliana
AT1G49520 0.5kb downstream 0.5kb downstream 2674 true Chr1: 18329696-18332369 Arabidopsis thaliana
AT1G49520 0.5kb downstream 0.5kb downstream 500 false Chr1: 18331870-18332369 Arabidopsis thaliana
AT1G49520 1.0kb upstream 1.0kb upstream 3174 true Chr1: 18328696-18331869 Arabidopsis thaliana
AT1G49520 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18328696-18329695 Arabidopsis thaliana
AT1G49520 1.0kb downstream 1.0kb downstream 3174 true Chr1: 18329696-18332869 Arabidopsis thaliana
AT1G49520 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18331870-18332869 Arabidopsis thaliana
AT1G49520 2.0kb upstream 2.0kb upstream 4174 true Chr1: 18327696-18331869 Arabidopsis thaliana
AT1G49520 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18327696-18329695 Arabidopsis thaliana
AT1G49520 2.0kb downstream 2.0kb downstream 4174 true Chr1: 18329696-18333869 Arabidopsis thaliana
AT1G49520 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18331870-18333869 Arabidopsis thaliana
AT1G49520 5.0kb upstream 5.0kb upstream 7174 true Chr1: 18324696-18331869 Arabidopsis thaliana
AT1G49520 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18324696-18329695 Arabidopsis thaliana
AT1G49520 5.0kb downstream 5.0kb downstream 7174 true Chr1: 18329696-18336869 Arabidopsis thaliana
AT1G49520 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18331870-18336869 Arabidopsis thaliana
AT1G49520 10.0kb upstream 10.0kb upstream 12174 true Chr1: 18319696-18331869 Arabidopsis thaliana
AT1G49520 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18319696-18329695 Arabidopsis thaliana
AT1G49520 10.0kb downstream 10.0kb downstream 12174 true Chr1: 18329696-18341869 Arabidopsis thaliana
AT1G49520 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18331870-18341869 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376837 5261 Brassicaceae View MSA
123838376 5264 Brassicales-Malvales View MSA
124337403 5266 SBM View MSA
124246136 5268 Malvidae View MSA
124069703 5270 Rosid View MSA
123745418 5271 Pentapetalae View MSA
122789577 5272 Eudicot View MSA
122051489 5273 Angiosperm View MSA
123429029 5275 Viridiplantae View MSA
121346122 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.238       Low
cufflinks 11.003        
cufflinks 5.554        
cufflinks 11.824        
cufflinks 4.975        
cufflinks 11.844        

0 Strain