Gene : AT1G49330 A. thaliana TAIR10
Defline:  hydroxyproline-rich glycoprotein family protein Genomic Order:  3960
Name:  ? AT1G49330 Secondary Identifier:  ? PAC:19651847
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G49330 0.5kb upstream 0.5kb upstream 1496 true Chr1: 18249543-18251038 Arabidopsis thaliana
AT1G49330 0.5kb upstream 0.5kb upstream 500 false Chr1: 18249543-18250042 Arabidopsis thaliana
AT1G49330 0.5kb downstream 0.5kb downstream 1496 true Chr1: 18250043-18251538 Arabidopsis thaliana
AT1G49330 0.5kb downstream 0.5kb downstream 500 false Chr1: 18251039-18251538 Arabidopsis thaliana
AT1G49330 1.0kb upstream 1.0kb upstream 1996 true Chr1: 18249043-18251038 Arabidopsis thaliana
AT1G49330 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18249043-18250042 Arabidopsis thaliana
AT1G49330 1.0kb downstream 1.0kb downstream 1996 true Chr1: 18250043-18252038 Arabidopsis thaliana
AT1G49330 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18251039-18252038 Arabidopsis thaliana
AT1G49330 2.0kb upstream 2.0kb upstream 2996 true Chr1: 18248043-18251038 Arabidopsis thaliana
AT1G49330 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18248043-18250042 Arabidopsis thaliana
AT1G49330 2.0kb downstream 2.0kb downstream 2996 true Chr1: 18250043-18253038 Arabidopsis thaliana
AT1G49330 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18251039-18253038 Arabidopsis thaliana
AT1G49330 5.0kb upstream 5.0kb upstream 5996 true Chr1: 18245043-18251038 Arabidopsis thaliana
AT1G49330 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18245043-18250042 Arabidopsis thaliana
AT1G49330 5.0kb downstream 5.0kb downstream 5996 true Chr1: 18250043-18256038 Arabidopsis thaliana
AT1G49330 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18251039-18256038 Arabidopsis thaliana
AT1G49330 10.0kb upstream 10.0kb upstream 10996 true Chr1: 18240043-18251038 Arabidopsis thaliana
AT1G49330 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18240043-18250042 Arabidopsis thaliana
AT1G49330 10.0kb downstream 10.0kb downstream 10996 true Chr1: 18250043-18261038 Arabidopsis thaliana
AT1G49330 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18251039-18261038 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374453 5261 Brassicaceae View MSA
123840974 5264 Brassicales-Malvales View MSA
124343912 5266 SBM View MSA
124253696 5268 Malvidae View MSA
124070104 5270 Rosid View MSA
123744296 5271 Pentapetalae View MSA
122797193 5272 Eudicot View MSA
122048849 5273 Angiosperm View MSA
121347660 5274 Embryophyte View MSA
123380593 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.183     Low High
cufflinks 0.052     Low  
cufflinks 0.031     Low Low
cufflinks 0.078     Low  
cufflinks 0.127     Low  

0 Strain