Gene : AT1G49560 A. thaliana TAIR10
Defline:  (1 of 1) PTHR31003//PTHR31003:SF7 - MYB FAMILY TRANSCRIPTION FACTOR // F14J22.20 PROTEIN Genomic Order:  3982
Name:  ? AT1G49560 Secondary Identifier:  ? PAC:19656105
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G49560 0.5kb upstream 0.5kb upstream 2310 true Chr1: 18342054-18344363 Arabidopsis thaliana
AT1G49560 0.5kb upstream 0.5kb upstream 500 false Chr1: 18342054-18342553 Arabidopsis thaliana
AT1G49560 0.5kb downstream 0.5kb downstream 2310 true Chr1: 18342554-18344863 Arabidopsis thaliana
AT1G49560 0.5kb downstream 0.5kb downstream 500 false Chr1: 18344364-18344863 Arabidopsis thaliana
AT1G49560 1.0kb upstream 1.0kb upstream 2810 true Chr1: 18341554-18344363 Arabidopsis thaliana
AT1G49560 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18341554-18342553 Arabidopsis thaliana
AT1G49560 1.0kb downstream 1.0kb downstream 2810 true Chr1: 18342554-18345363 Arabidopsis thaliana
AT1G49560 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18344364-18345363 Arabidopsis thaliana
AT1G49560 2.0kb upstream 2.0kb upstream 3810 true Chr1: 18340554-18344363 Arabidopsis thaliana
AT1G49560 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18340554-18342553 Arabidopsis thaliana
AT1G49560 2.0kb downstream 2.0kb downstream 3810 true Chr1: 18342554-18346363 Arabidopsis thaliana
AT1G49560 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18344364-18346363 Arabidopsis thaliana
AT1G49560 5.0kb upstream 5.0kb upstream 6810 true Chr1: 18337554-18344363 Arabidopsis thaliana
AT1G49560 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18337554-18342553 Arabidopsis thaliana
AT1G49560 5.0kb downstream 5.0kb downstream 6810 true Chr1: 18342554-18349363 Arabidopsis thaliana
AT1G49560 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18344364-18349363 Arabidopsis thaliana
AT1G49560 10.0kb upstream 10.0kb upstream 11810 true Chr1: 18332554-18344363 Arabidopsis thaliana
AT1G49560 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18332554-18342553 Arabidopsis thaliana
AT1G49560 10.0kb downstream 10.0kb downstream 11810 true Chr1: 18342554-18354363 Arabidopsis thaliana
AT1G49560 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18344364-18354363 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370891 5261 Brassicaceae View MSA
123840622 5264 Brassicales-Malvales View MSA
124348347 5266 SBM View MSA
124251556 5268 Malvidae View MSA
124070700 5270 Rosid View MSA
123742212 5271 Pentapetalae View MSA
122792121 5272 Eudicot View MSA
122049766 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121350891 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.3       Low
cufflinks 17.305       High
cufflinks 12.697        
cufflinks 16.658        
cufflinks 9.603       Low
cufflinks 13.511        

0 Strain