Gene : AT1G48860 A. thaliana TAIR10
Defline:  (1 of 2) 2.5.1.19 - 3-phosphoshikimate 1-carboxyvinyltransferase / EPSP synthase Genomic Order:  3914
Name:  ? AT1G48860 Secondary Identifier:  ? PAC:19657449
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana ARO-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-6163 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G48860 0.5kb upstream 0.5kb upstream 3260 true Chr1: 18068707-18071966 Arabidopsis thaliana
AT1G48860 0.5kb upstream 0.5kb upstream 500 false Chr1: 18071467-18071966 Arabidopsis thaliana
AT1G48860 0.5kb downstream 0.5kb downstream 3260 true Chr1: 18068207-18071466 Arabidopsis thaliana
AT1G48860 0.5kb downstream 0.5kb downstream 500 false Chr1: 18068207-18068706 Arabidopsis thaliana
AT1G48860 1.0kb upstream 1.0kb upstream 3760 true Chr1: 18068707-18072466 Arabidopsis thaliana
AT1G48860 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18071467-18072466 Arabidopsis thaliana
AT1G48860 1.0kb downstream 1.0kb downstream 3760 true Chr1: 18067707-18071466 Arabidopsis thaliana
AT1G48860 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18067707-18068706 Arabidopsis thaliana
AT1G48860 2.0kb upstream 2.0kb upstream 4760 true Chr1: 18068707-18073466 Arabidopsis thaliana
AT1G48860 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18071467-18073466 Arabidopsis thaliana
AT1G48860 2.0kb downstream 2.0kb downstream 4760 true Chr1: 18066707-18071466 Arabidopsis thaliana
AT1G48860 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18066707-18068706 Arabidopsis thaliana
AT1G48860 5.0kb upstream 5.0kb upstream 7760 true Chr1: 18068707-18076466 Arabidopsis thaliana
AT1G48860 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18071467-18076466 Arabidopsis thaliana
AT1G48860 5.0kb downstream 5.0kb downstream 7760 true Chr1: 18063707-18071466 Arabidopsis thaliana
AT1G48860 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18063707-18068706 Arabidopsis thaliana
AT1G48860 10.0kb upstream 10.0kb upstream 12760 true Chr1: 18068707-18081466 Arabidopsis thaliana
AT1G48860 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18071467-18081466 Arabidopsis thaliana
AT1G48860 10.0kb downstream 10.0kb downstream 12760 true Chr1: 18058707-18071466 Arabidopsis thaliana
AT1G48860 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18058707-18068706 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332027 5261 Brassicaceae View MSA
123773145 5264 Brassicales-Malvales View MSA
124271643 5266 SBM View MSA
124127610 5268 Malvidae View MSA
123856441 5270 Rosid View MSA
123442367 5271 Pentapetalae View MSA
122477945 5272 Eudicot View MSA
122041964 5273 Angiosperm View MSA
121345789 5274 Embryophyte View MSA
123424749 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.361       Low
cufflinks 11.41        
cufflinks 9.483        
cufflinks 13.279       High
cufflinks 9.011        
cufflinks 13.436       High

0 Strain