Gene : AT1G48580 A. thaliana TAIR10
Defline:  (1 of 1) PF15072 - Domain of unknown function (DUF4539) (DUF4539) Genomic Order:  3885
Name:  ? AT1G48580 Secondary Identifier:  ? PAC:19657448
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G48580 0.5kb upstream 0.5kb upstream 2848 true Chr1: 17958263-17961110 Arabidopsis thaliana
AT1G48580 0.5kb upstream 0.5kb upstream 500 false Chr1: 17960611-17961110 Arabidopsis thaliana
AT1G48580 0.5kb downstream 0.5kb downstream 2848 true Chr1: 17957763-17960610 Arabidopsis thaliana
AT1G48580 0.5kb downstream 0.5kb downstream 500 false Chr1: 17957763-17958262 Arabidopsis thaliana
AT1G48580 1.0kb upstream 1.0kb upstream 3348 true Chr1: 17958263-17961610 Arabidopsis thaliana
AT1G48580 1.0kb upstream 1.0kb upstream 1000 false Chr1: 17960611-17961610 Arabidopsis thaliana
AT1G48580 1.0kb downstream 1.0kb downstream 3348 true Chr1: 17957263-17960610 Arabidopsis thaliana
AT1G48580 1.0kb downstream 1.0kb downstream 1000 false Chr1: 17957263-17958262 Arabidopsis thaliana
AT1G48580 2.0kb upstream 2.0kb upstream 4348 true Chr1: 17958263-17962610 Arabidopsis thaliana
AT1G48580 2.0kb upstream 2.0kb upstream 2000 false Chr1: 17960611-17962610 Arabidopsis thaliana
AT1G48580 2.0kb downstream 2.0kb downstream 4348 true Chr1: 17956263-17960610 Arabidopsis thaliana
AT1G48580 2.0kb downstream 2.0kb downstream 2000 false Chr1: 17956263-17958262 Arabidopsis thaliana
AT1G48580 5.0kb upstream 5.0kb upstream 7348 true Chr1: 17958263-17965610 Arabidopsis thaliana
AT1G48580 5.0kb upstream 5.0kb upstream 5000 false Chr1: 17960611-17965610 Arabidopsis thaliana
AT1G48580 5.0kb downstream 5.0kb downstream 7348 true Chr1: 17953263-17960610 Arabidopsis thaliana
AT1G48580 5.0kb downstream 5.0kb downstream 5000 false Chr1: 17953263-17958262 Arabidopsis thaliana
AT1G48580 10.0kb upstream 10.0kb upstream 12348 true Chr1: 17958263-17970610 Arabidopsis thaliana
AT1G48580 10.0kb upstream 10.0kb upstream 10000 false Chr1: 17960611-17970610 Arabidopsis thaliana
AT1G48580 10.0kb downstream 10.0kb downstream 12348 true Chr1: 17948263-17960610 Arabidopsis thaliana
AT1G48580 10.0kb downstream 10.0kb downstream 10000 false Chr1: 17948263-17958262 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372803 5261 Brassicaceae View MSA
123834843 5264 Brassicales-Malvales View MSA
124321969 5266 SBM View MSA
124247382 5268 Malvidae View MSA
124061521 5270 Rosid View MSA
123742114 5271 Pentapetalae View MSA
122792818 5272 Eudicot View MSA
122049874 5273 Angiosperm View MSA
121311625 5274 Embryophyte View MSA
123348898 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.581        
cufflinks 1.623        
cufflinks 0.504        
cufflinks 1.547        
cufflinks 0.494       Low
cufflinks 1.612        

0 Strain