Gene : RBP47C A. thaliana TAIR10
Primary Identifier:  ? AT1G47490 Defline:  (1 of 1) KOG0123//KOG0131 - Polyadenylate-binding protein (RRM superfamily) // Splicing factor 3b, subunit 4
Genomic Order:  3773 Name:  ? AT1G47490
Secondary Identifier:  ? PAC:19650694
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G47490 0.5kb upstream 0.5kb upstream 3307 true Chr1: 17424169-17427475 Arabidopsis thaliana
AT1G47490 0.5kb upstream 0.5kb upstream 500 false Chr1: 17424169-17424668 Arabidopsis thaliana
AT1G47490 0.5kb downstream 0.5kb downstream 3307 true Chr1: 17424669-17427975 Arabidopsis thaliana
AT1G47490 0.5kb downstream 0.5kb downstream 500 false Chr1: 17427476-17427975 Arabidopsis thaliana
AT1G47490 1.0kb upstream 1.0kb upstream 3807 true Chr1: 17423669-17427475 Arabidopsis thaliana
AT1G47490 1.0kb upstream 1.0kb upstream 1000 false Chr1: 17423669-17424668 Arabidopsis thaliana
AT1G47490 1.0kb downstream 1.0kb downstream 3807 true Chr1: 17424669-17428475 Arabidopsis thaliana
AT1G47490 1.0kb downstream 1.0kb downstream 1000 false Chr1: 17427476-17428475 Arabidopsis thaliana
AT1G47490 2.0kb upstream 2.0kb upstream 4807 true Chr1: 17422669-17427475 Arabidopsis thaliana
AT1G47490 2.0kb upstream 2.0kb upstream 2000 false Chr1: 17422669-17424668 Arabidopsis thaliana
AT1G47490 2.0kb downstream 2.0kb downstream 4807 true Chr1: 17424669-17429475 Arabidopsis thaliana
AT1G47490 2.0kb downstream 2.0kb downstream 2000 false Chr1: 17427476-17429475 Arabidopsis thaliana
AT1G47490 5.0kb upstream 5.0kb upstream 7807 true Chr1: 17419669-17427475 Arabidopsis thaliana
AT1G47490 5.0kb upstream 5.0kb upstream 5000 false Chr1: 17419669-17424668 Arabidopsis thaliana
AT1G47490 5.0kb downstream 5.0kb downstream 7807 true Chr1: 17424669-17432475 Arabidopsis thaliana
AT1G47490 5.0kb downstream 5.0kb downstream 5000 false Chr1: 17427476-17432475 Arabidopsis thaliana
AT1G47490 10.0kb upstream 10.0kb upstream 12807 true Chr1: 17414669-17427475 Arabidopsis thaliana
AT1G47490 10.0kb upstream 10.0kb upstream 10000 false Chr1: 17414669-17424668 Arabidopsis thaliana
AT1G47490 10.0kb downstream 10.0kb downstream 12807 true Chr1: 17424669-17437475 Arabidopsis thaliana
AT1G47490 10.0kb downstream 10.0kb downstream 10000 false Chr1: 17427476-17437475 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377393 5261 Brassicaceae View MSA
123836440 5264 Brassicales-Malvales View MSA
124343009 5266 SBM View MSA
124239372 5268 Malvidae View MSA
124064535 5270 Rosid View MSA
123751271 5271 Pentapetalae View MSA
122796677 5272 Eudicot View MSA
122051452 5273 Angiosperm View MSA
121351371 5274 Embryophyte View MSA
123424048 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.444        
cufflinks 13.359        
cufflinks 13.06        
cufflinks 13.349        
cufflinks 10.301       Low
cufflinks 12.986        

0 Strain