Gene : PAF2 A. thaliana TAIR10
Primary Identifier:  ? AT1G47250 Defline:  (1 of 2) K02725 - 20S proteasome subunit alpha 6 (PSMA1)
Genomic Order:  3747 Name:  ? AT1G47250
Secondary Identifier:  ? PAC:19658242
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G47250 0.5kb upstream 0.5kb upstream 2398 true Chr1: 17318677-17321074 Arabidopsis thaliana
AT1G47250 0.5kb upstream 0.5kb upstream 500 false Chr1: 17318677-17319176 Arabidopsis thaliana
AT1G47250 0.5kb downstream 0.5kb downstream 2398 true Chr1: 17319177-17321574 Arabidopsis thaliana
AT1G47250 0.5kb downstream 0.5kb downstream 500 false Chr1: 17321075-17321574 Arabidopsis thaliana
AT1G47250 1.0kb upstream 1.0kb upstream 2898 true Chr1: 17318177-17321074 Arabidopsis thaliana
AT1G47250 1.0kb upstream 1.0kb upstream 1000 false Chr1: 17318177-17319176 Arabidopsis thaliana
AT1G47250 1.0kb downstream 1.0kb downstream 2898 true Chr1: 17319177-17322074 Arabidopsis thaliana
AT1G47250 1.0kb downstream 1.0kb downstream 1000 false Chr1: 17321075-17322074 Arabidopsis thaliana
AT1G47250 2.0kb upstream 2.0kb upstream 3898 true Chr1: 17317177-17321074 Arabidopsis thaliana
AT1G47250 2.0kb upstream 2.0kb upstream 2000 false Chr1: 17317177-17319176 Arabidopsis thaliana
AT1G47250 2.0kb downstream 2.0kb downstream 3898 true Chr1: 17319177-17323074 Arabidopsis thaliana
AT1G47250 2.0kb downstream 2.0kb downstream 2000 false Chr1: 17321075-17323074 Arabidopsis thaliana
AT1G47250 5.0kb upstream 5.0kb upstream 6898 true Chr1: 17314177-17321074 Arabidopsis thaliana
AT1G47250 5.0kb upstream 5.0kb upstream 5000 false Chr1: 17314177-17319176 Arabidopsis thaliana
AT1G47250 5.0kb downstream 5.0kb downstream 6898 true Chr1: 17319177-17326074 Arabidopsis thaliana
AT1G47250 5.0kb downstream 5.0kb downstream 5000 false Chr1: 17321075-17326074 Arabidopsis thaliana
AT1G47250 10.0kb upstream 10.0kb upstream 11898 true Chr1: 17309177-17321074 Arabidopsis thaliana
AT1G47250 10.0kb upstream 10.0kb upstream 10000 false Chr1: 17309177-17319176 Arabidopsis thaliana
AT1G47250 10.0kb downstream 10.0kb downstream 11898 true Chr1: 17319177-17331074 Arabidopsis thaliana
AT1G47250 10.0kb downstream 10.0kb downstream 10000 false Chr1: 17321075-17331074 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367657 5261 Brassicaceae View MSA
123838687 5264 Brassicales-Malvales View MSA
124340801 5266 SBM View MSA
124251312 5268 Malvidae View MSA
124065992 5270 Rosid View MSA
123739295 5271 Pentapetalae View MSA
122791097 5272 Eudicot View MSA
122046892 5273 Angiosperm View MSA
121347001 5274 Embryophyte View MSA
123424863 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.098        
cufflinks 19.778        
cufflinks 12.137       Low
cufflinks 18.958        
cufflinks 12.072       Low
cufflinks 22.306       High

0 Strain