Gene : AT1G43080 A. thaliana TAIR10
Defline:  (1 of 16) 3.2.1.15//3.2.1.67 - Polygalacturonase / Pectinase // Galacturan 1,4-alpha-galacturonidase / Poly(galacturonate) hydrolase Genomic Order:  3597
Name:  ? AT1G43080 Secondary Identifier:  ? PAC:19651837
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1081 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G43080 0.5kb upstream 0.5kb upstream 2334 true Chr1: 16213995-16216328 Arabidopsis thaliana
AT1G43080 0.5kb upstream 0.5kb upstream 500 false Chr1: 16215829-16216328 Arabidopsis thaliana
AT1G43080 0.5kb downstream 0.5kb downstream 2334 true Chr1: 16213495-16215828 Arabidopsis thaliana
AT1G43080 0.5kb downstream 0.5kb downstream 500 false Chr1: 16213495-16213994 Arabidopsis thaliana
AT1G43080 1.0kb upstream 1.0kb upstream 2834 true Chr1: 16213995-16216828 Arabidopsis thaliana
AT1G43080 1.0kb upstream 1.0kb upstream 1000 false Chr1: 16215829-16216828 Arabidopsis thaliana
AT1G43080 1.0kb downstream 1.0kb downstream 2834 true Chr1: 16212995-16215828 Arabidopsis thaliana
AT1G43080 1.0kb downstream 1.0kb downstream 1000 false Chr1: 16212995-16213994 Arabidopsis thaliana
AT1G43080 2.0kb upstream 2.0kb upstream 3834 true Chr1: 16213995-16217828 Arabidopsis thaliana
AT1G43080 2.0kb upstream 2.0kb upstream 2000 false Chr1: 16215829-16217828 Arabidopsis thaliana
AT1G43080 2.0kb downstream 2.0kb downstream 3834 true Chr1: 16211995-16215828 Arabidopsis thaliana
AT1G43080 2.0kb downstream 2.0kb downstream 2000 false Chr1: 16211995-16213994 Arabidopsis thaliana
AT1G43080 5.0kb upstream 5.0kb upstream 6834 true Chr1: 16213995-16220828 Arabidopsis thaliana
AT1G43080 5.0kb upstream 5.0kb upstream 5000 false Chr1: 16215829-16220828 Arabidopsis thaliana
AT1G43080 5.0kb downstream 5.0kb downstream 6834 true Chr1: 16208995-16215828 Arabidopsis thaliana
AT1G43080 5.0kb downstream 5.0kb downstream 5000 false Chr1: 16208995-16213994 Arabidopsis thaliana
AT1G43080 10.0kb upstream 10.0kb upstream 11834 true Chr1: 16213995-16225828 Arabidopsis thaliana
AT1G43080 10.0kb upstream 10.0kb upstream 10000 false Chr1: 16215829-16225828 Arabidopsis thaliana
AT1G43080 10.0kb downstream 10.0kb downstream 11834 true Chr1: 16203995-16215828 Arabidopsis thaliana
AT1G43080 10.0kb downstream 10.0kb downstream 10000 false Chr1: 16203995-16213994 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381128 5261 Brassicaceae View MSA
123837525 5264 Brassicales-Malvales View MSA
124337889 5266 SBM View MSA
124240129 5268 Malvidae View MSA
124074410 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain