Gene : AT1G16830 A. thaliana TAIR10
Defline:  (1 of 185) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1690
Name:  ? AT1G16830 Secondary Identifier:  ? PAC:19651868
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G16830 0.5kb upstream 0.5kb upstream 2348 true Chr1: 5760272-5762619 Arabidopsis thaliana
AT1G16830 0.5kb upstream 0.5kb upstream 500 false Chr1: 5760272-5760771 Arabidopsis thaliana
AT1G16830 0.5kb downstream 0.5kb downstream 2348 true Chr1: 5760772-5763119 Arabidopsis thaliana
AT1G16830 0.5kb downstream 0.5kb downstream 500 false Chr1: 5762620-5763119 Arabidopsis thaliana
AT1G16830 1.0kb upstream 1.0kb upstream 2848 true Chr1: 5759772-5762619 Arabidopsis thaliana
AT1G16830 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5759772-5760771 Arabidopsis thaliana
AT1G16830 1.0kb downstream 1.0kb downstream 2848 true Chr1: 5760772-5763619 Arabidopsis thaliana
AT1G16830 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5762620-5763619 Arabidopsis thaliana
AT1G16830 2.0kb upstream 2.0kb upstream 3848 true Chr1: 5758772-5762619 Arabidopsis thaliana
AT1G16830 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5758772-5760771 Arabidopsis thaliana
AT1G16830 2.0kb downstream 2.0kb downstream 3848 true Chr1: 5760772-5764619 Arabidopsis thaliana
AT1G16830 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5762620-5764619 Arabidopsis thaliana
AT1G16830 5.0kb upstream 5.0kb upstream 6848 true Chr1: 5755772-5762619 Arabidopsis thaliana
AT1G16830 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5755772-5760771 Arabidopsis thaliana
AT1G16830 5.0kb downstream 5.0kb downstream 6848 true Chr1: 5760772-5767619 Arabidopsis thaliana
AT1G16830 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5762620-5767619 Arabidopsis thaliana
AT1G16830 10.0kb upstream 10.0kb upstream 11848 true Chr1: 5750772-5762619 Arabidopsis thaliana
AT1G16830 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5750772-5760771 Arabidopsis thaliana
AT1G16830 10.0kb downstream 10.0kb downstream 11848 true Chr1: 5760772-5772619 Arabidopsis thaliana
AT1G16830 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5762620-5772619 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041217 5273 Angiosperm View MSA
122361633 5261 Brassicaceae View MSA
123830531 5264 Brassicales-Malvales View MSA
124347816 5266 SBM View MSA
124243814 5268 Malvidae View MSA
124067032 5270 Rosid View MSA
123740390 5271 Pentapetalae View MSA
122769977 5272 Eudicot View MSA
121309817 5274 Embryophyte View MSA
123347469 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.029        
cufflinks 1.683        
cufflinks 0.969        
cufflinks 1.821        
cufflinks 0.694       Low
cufflinks 1.903        

0 Strain