Gene : SPS2 A. thaliana TAIR10
Primary Identifier:  ? AT1G17050 Defline:  (1 of 2) 2.5.1.90 - All-trans-octaprenyl-diphosphate synthase / Trans-prenyltransferase
Genomic Order:  1714 Name:  ? AT1G17050
Secondary Identifier:  ? PAC:19657580
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Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana HEXPPSYN-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-5120 Arabidopsis thaliana pathologic  
Athaliana PWY-5783 Arabidopsis thaliana pathologic  
Athaliana PWY-5805 Arabidopsis thaliana pathologic  
Athaliana PWY-5807 Arabidopsis thaliana pathologic  
Athaliana PWY-5864 Arabidopsis thaliana pathologic  
Athaliana PWY-5910 Arabidopsis thaliana pathologic  
Athaliana PWY-6520 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G17050 0.5kb upstream 0.5kb upstream 2764 true Chr1: 5828580-5831343 Arabidopsis thaliana
AT1G17050 0.5kb upstream 0.5kb upstream 500 false Chr1: 5828580-5829079 Arabidopsis thaliana
AT1G17050 0.5kb downstream 0.5kb downstream 2764 true Chr1: 5829080-5831843 Arabidopsis thaliana
AT1G17050 0.5kb downstream 0.5kb downstream 500 false Chr1: 5831344-5831843 Arabidopsis thaliana
AT1G17050 1.0kb upstream 1.0kb upstream 3264 true Chr1: 5828080-5831343 Arabidopsis thaliana
AT1G17050 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5828080-5829079 Arabidopsis thaliana
AT1G17050 1.0kb downstream 1.0kb downstream 3264 true Chr1: 5829080-5832343 Arabidopsis thaliana
AT1G17050 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5831344-5832343 Arabidopsis thaliana
AT1G17050 2.0kb upstream 2.0kb upstream 4264 true Chr1: 5827080-5831343 Arabidopsis thaliana
AT1G17050 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5827080-5829079 Arabidopsis thaliana
AT1G17050 2.0kb downstream 2.0kb downstream 4264 true Chr1: 5829080-5833343 Arabidopsis thaliana
AT1G17050 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5831344-5833343 Arabidopsis thaliana
AT1G17050 5.0kb upstream 5.0kb upstream 7264 true Chr1: 5824080-5831343 Arabidopsis thaliana
AT1G17050 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5824080-5829079 Arabidopsis thaliana
AT1G17050 5.0kb downstream 5.0kb downstream 7264 true Chr1: 5829080-5836343 Arabidopsis thaliana
AT1G17050 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5831344-5836343 Arabidopsis thaliana
AT1G17050 10.0kb upstream 10.0kb upstream 12264 true Chr1: 5819080-5831343 Arabidopsis thaliana
AT1G17050 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5819080-5829079 Arabidopsis thaliana
AT1G17050 10.0kb downstream 10.0kb downstream 12264 true Chr1: 5829080-5841343 Arabidopsis thaliana
AT1G17050 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5831344-5841343 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041065 5273 Angiosperm View MSA
122378497 5261 Brassicaceae View MSA
123836843 5264 Brassicales-Malvales View MSA
124340662 5266 SBM View MSA
124241252 5268 Malvidae View MSA
124065347 5270 Rosid View MSA
123746184 5271 Pentapetalae View MSA
122791358 5272 Eudicot View MSA
121345449 5274 Embryophyte View MSA
123424009 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.734        
cufflinks 4.414       Low
cufflinks 8.973        
cufflinks 7.622        
cufflinks 10.265       High
cufflinks 4.842       Low

0 Strain