Gene : AT1G16220 A. thaliana TAIR10
Defline:  (1 of 4) PTHR13832//PTHR13832:SF286 - PROTEIN PHOSPHATASE 2C // PROTEIN PHOSPHATASE 2C 33-RELATED Genomic Order:  1630
Name:  ? AT1G16220 Secondary Identifier:  ? PAC:19653846
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G16220 0.5kb upstream 0.5kb upstream 2401 true Chr1: 5548153-5550553 Arabidopsis thaliana
AT1G16220 0.5kb upstream 0.5kb upstream 500 false Chr1: 5548153-5548652 Arabidopsis thaliana
AT1G16220 0.5kb downstream 0.5kb downstream 2401 true Chr1: 5548653-5551053 Arabidopsis thaliana
AT1G16220 0.5kb downstream 0.5kb downstream 500 false Chr1: 5550554-5551053 Arabidopsis thaliana
AT1G16220 1.0kb upstream 1.0kb upstream 2901 true Chr1: 5547653-5550553 Arabidopsis thaliana
AT1G16220 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5547653-5548652 Arabidopsis thaliana
AT1G16220 1.0kb downstream 1.0kb downstream 2901 true Chr1: 5548653-5551553 Arabidopsis thaliana
AT1G16220 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5550554-5551553 Arabidopsis thaliana
AT1G16220 2.0kb upstream 2.0kb upstream 3901 true Chr1: 5546653-5550553 Arabidopsis thaliana
AT1G16220 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5546653-5548652 Arabidopsis thaliana
AT1G16220 2.0kb downstream 2.0kb downstream 3901 true Chr1: 5548653-5552553 Arabidopsis thaliana
AT1G16220 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5550554-5552553 Arabidopsis thaliana
AT1G16220 5.0kb upstream 5.0kb upstream 6901 true Chr1: 5543653-5550553 Arabidopsis thaliana
AT1G16220 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5543653-5548652 Arabidopsis thaliana
AT1G16220 5.0kb downstream 5.0kb downstream 6901 true Chr1: 5548653-5555553 Arabidopsis thaliana
AT1G16220 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5550554-5555553 Arabidopsis thaliana
AT1G16220 10.0kb upstream 10.0kb upstream 11901 true Chr1: 5538653-5550553 Arabidopsis thaliana
AT1G16220 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5538653-5548652 Arabidopsis thaliana
AT1G16220 10.0kb downstream 10.0kb downstream 11901 true Chr1: 5548653-5560553 Arabidopsis thaliana
AT1G16220 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5550554-5560553 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374534 5261 Brassicaceae View MSA
123837854 5264 Brassicales-Malvales View MSA
124338188 5266 SBM View MSA
124238908 5268 Malvidae View MSA
124068066 5270 Rosid View MSA
123751353 5271 Pentapetalae View MSA
122793781 5272 Eudicot View MSA
122043983 5273 Angiosperm View MSA
121350683 5274 Embryophyte View MSA
123426661 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.428        
cufflinks 8.631        
cufflinks 1.208       Low
cufflinks 7.1        
cufflinks 1.101       Low
cufflinks 9.302        

0 Strain