Gene : AT1G16290 A. thaliana TAIR10
Defline:  (1 of 1) PF01464 - Transglycosylase SLT domain (SLT) Genomic Order:  1638
Name:  ? AT1G16290 Secondary Identifier:  ? PAC:19650257
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G16290 0.5kb upstream 0.5kb upstream 3286 true Chr1: 5570753-5574038 Arabidopsis thaliana
AT1G16290 0.5kb upstream 0.5kb upstream 500 false Chr1: 5573539-5574038 Arabidopsis thaliana
AT1G16290 0.5kb downstream 0.5kb downstream 3286 true Chr1: 5570253-5573538 Arabidopsis thaliana
AT1G16290 0.5kb downstream 0.5kb downstream 500 false Chr1: 5570253-5570752 Arabidopsis thaliana
AT1G16290 1.0kb upstream 1.0kb upstream 3786 true Chr1: 5570753-5574538 Arabidopsis thaliana
AT1G16290 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5573539-5574538 Arabidopsis thaliana
AT1G16290 1.0kb downstream 1.0kb downstream 3786 true Chr1: 5569753-5573538 Arabidopsis thaliana
AT1G16290 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5569753-5570752 Arabidopsis thaliana
AT1G16290 2.0kb upstream 2.0kb upstream 4786 true Chr1: 5570753-5575538 Arabidopsis thaliana
AT1G16290 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5573539-5575538 Arabidopsis thaliana
AT1G16290 2.0kb downstream 2.0kb downstream 4786 true Chr1: 5568753-5573538 Arabidopsis thaliana
AT1G16290 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5568753-5570752 Arabidopsis thaliana
AT1G16290 5.0kb upstream 5.0kb upstream 7786 true Chr1: 5570753-5578538 Arabidopsis thaliana
AT1G16290 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5573539-5578538 Arabidopsis thaliana
AT1G16290 5.0kb downstream 5.0kb downstream 7786 true Chr1: 5565753-5573538 Arabidopsis thaliana
AT1G16290 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5565753-5570752 Arabidopsis thaliana
AT1G16290 10.0kb upstream 10.0kb upstream 12786 true Chr1: 5570753-5583538 Arabidopsis thaliana
AT1G16290 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5573539-5583538 Arabidopsis thaliana
AT1G16290 10.0kb downstream 10.0kb downstream 12786 true Chr1: 5560753-5573538 Arabidopsis thaliana
AT1G16290 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5560753-5570752 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026274 5273 Angiosperm View MSA
122374503 5261 Brassicaceae View MSA
123828343 5264 Brassicales-Malvales View MSA
124343592 5266 SBM View MSA
124254439 5268 Malvidae View MSA
124063364 5270 Rosid View MSA
123738114 5271 Pentapetalae View MSA
122789993 5272 Eudicot View MSA
121350872 5274 Embryophyte View MSA
123381917 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.01     Low  
cufflinks 0.027     Low  
cufflinks 0.005     Low  
cufflinks 0.006     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.047     Low High

0 Strain