Gene : CCR1 A. thaliana TAIR10
Primary Identifier:  ? AT1G15950 Defline:  (1 of 2) K09753 - cinnamoyl-CoA reductase (CCR)
Genomic Order:  1605 Name:  ? AT1G15950
Secondary Identifier:  ? PAC:19650583
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-361 Arabidopsis thaliana pathologic  

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G15950 0.5kb upstream 0.5kb upstream 3927 true Chr1: 5478254-5482180 Arabidopsis thaliana
AT1G15950 0.5kb upstream 0.5kb upstream 500 false Chr1: 5478254-5478753 Arabidopsis thaliana
AT1G15950 0.5kb downstream 0.5kb downstream 3927 true Chr1: 5478754-5482680 Arabidopsis thaliana
AT1G15950 0.5kb downstream 0.5kb downstream 500 false Chr1: 5482181-5482680 Arabidopsis thaliana
AT1G15950 1.0kb upstream 1.0kb upstream 4427 true Chr1: 5477754-5482180 Arabidopsis thaliana
AT1G15950 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5477754-5478753 Arabidopsis thaliana
AT1G15950 1.0kb downstream 1.0kb downstream 4427 true Chr1: 5478754-5483180 Arabidopsis thaliana
AT1G15950 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5482181-5483180 Arabidopsis thaliana
AT1G15950 2.0kb upstream 2.0kb upstream 5427 true Chr1: 5476754-5482180 Arabidopsis thaliana
AT1G15950 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5476754-5478753 Arabidopsis thaliana
AT1G15950 2.0kb downstream 2.0kb downstream 5427 true Chr1: 5478754-5484180 Arabidopsis thaliana
AT1G15950 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5482181-5484180 Arabidopsis thaliana
AT1G15950 5.0kb upstream 5.0kb upstream 8427 true Chr1: 5473754-5482180 Arabidopsis thaliana
AT1G15950 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5473754-5478753 Arabidopsis thaliana
AT1G15950 5.0kb downstream 5.0kb downstream 8427 true Chr1: 5478754-5487180 Arabidopsis thaliana
AT1G15950 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5482181-5487180 Arabidopsis thaliana
AT1G15950 10.0kb upstream 10.0kb upstream 13427 true Chr1: 5468754-5482180 Arabidopsis thaliana
AT1G15950 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5468754-5478753 Arabidopsis thaliana
AT1G15950 10.0kb downstream 10.0kb downstream 13427 true Chr1: 5478754-5492180 Arabidopsis thaliana
AT1G15950 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5482181-5492180 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041043 5273 Angiosperm View MSA
122380734 5261 Brassicaceae View MSA
123829409 5264 Brassicales-Malvales View MSA
124344604 5266 SBM View MSA
124243551 5268 Malvidae View MSA
124063767 5270 Rosid View MSA
123748181 5271 Pentapetalae View MSA
122792644 5272 Eudicot View MSA
121350507 5274 Embryophyte View MSA
123428289 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.38        
cufflinks 30.11     High  
cufflinks 5.959       Low
cufflinks 32.605     High  
cufflinks 7.897        
cufflinks 34.168     High  

0 Strain