Gene : AT1G15710 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11811//PTHR11811:SF35 - 6-PHOSPHOGLUCONATE DEHYDROGENASE // AROGENATE DEHYDROGENASE 2, CHLOROPLASTIC Genomic Order:  1577
Name:  ? AT1G15710 Secondary Identifier:  ? PAC:19657213
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-3461 Arabidopsis thaliana pathologic  
Athaliana PWY-3481 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G15710 0.5kb upstream 0.5kb upstream 1829 true Chr1: 5403858-5405686 Arabidopsis thaliana
AT1G15710 0.5kb upstream 0.5kb upstream 500 false Chr1: 5403858-5404357 Arabidopsis thaliana
AT1G15710 0.5kb downstream 0.5kb downstream 1829 true Chr1: 5404358-5406186 Arabidopsis thaliana
AT1G15710 0.5kb downstream 0.5kb downstream 500 false Chr1: 5405687-5406186 Arabidopsis thaliana
AT1G15710 1.0kb upstream 1.0kb upstream 2329 true Chr1: 5403358-5405686 Arabidopsis thaliana
AT1G15710 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5403358-5404357 Arabidopsis thaliana
AT1G15710 1.0kb downstream 1.0kb downstream 2329 true Chr1: 5404358-5406686 Arabidopsis thaliana
AT1G15710 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5405687-5406686 Arabidopsis thaliana
AT1G15710 2.0kb upstream 2.0kb upstream 3329 true Chr1: 5402358-5405686 Arabidopsis thaliana
AT1G15710 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5402358-5404357 Arabidopsis thaliana
AT1G15710 2.0kb downstream 2.0kb downstream 3329 true Chr1: 5404358-5407686 Arabidopsis thaliana
AT1G15710 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5405687-5407686 Arabidopsis thaliana
AT1G15710 5.0kb upstream 5.0kb upstream 6329 true Chr1: 5399358-5405686 Arabidopsis thaliana
AT1G15710 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5399358-5404357 Arabidopsis thaliana
AT1G15710 5.0kb downstream 5.0kb downstream 6329 true Chr1: 5404358-5410686 Arabidopsis thaliana
AT1G15710 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5405687-5410686 Arabidopsis thaliana
AT1G15710 10.0kb upstream 10.0kb upstream 11329 true Chr1: 5394358-5405686 Arabidopsis thaliana
AT1G15710 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5394358-5404357 Arabidopsis thaliana
AT1G15710 10.0kb downstream 10.0kb downstream 11329 true Chr1: 5404358-5415686 Arabidopsis thaliana
AT1G15710 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5405687-5415686 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369917 5261 Brassicaceae View MSA
123830710 5264 Brassicales-Malvales View MSA
124346336 5266 SBM View MSA
124247308 5268 Malvidae View MSA
124070774 5270 Rosid View MSA
123749744 5271 Pentapetalae View MSA
122797141 5272 Eudicot View MSA
122050819 5273 Angiosperm View MSA
121351682 5274 Embryophyte View MSA
123427304 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.93        
cufflinks 13.974        
cufflinks 11.628        
cufflinks 12.408        
cufflinks 8.186       Low
cufflinks 13.708        

0 Strain