Gene : AT1G15180 A. thaliana TAIR10
Defline:  (1 of 14) PTHR11206:SF87 - MATE EFFLUX FAMILY PROTEIN-RELATED Genomic Order:  1525
Name:  ? AT1G15180 Secondary Identifier:  ? PAC:19655641
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G15180 0.5kb upstream 0.5kb upstream 2818 true Chr1: 5223885-5226702 Arabidopsis thaliana
AT1G15180 0.5kb upstream 0.5kb upstream 500 false Chr1: 5223885-5224384 Arabidopsis thaliana
AT1G15180 0.5kb downstream 0.5kb downstream 2818 true Chr1: 5224385-5227202 Arabidopsis thaliana
AT1G15180 0.5kb downstream 0.5kb downstream 500 false Chr1: 5226703-5227202 Arabidopsis thaliana
AT1G15180 1.0kb upstream 1.0kb upstream 3318 true Chr1: 5223385-5226702 Arabidopsis thaliana
AT1G15180 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5223385-5224384 Arabidopsis thaliana
AT1G15180 1.0kb downstream 1.0kb downstream 3318 true Chr1: 5224385-5227702 Arabidopsis thaliana
AT1G15180 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5226703-5227702 Arabidopsis thaliana
AT1G15180 2.0kb upstream 2.0kb upstream 4318 true Chr1: 5222385-5226702 Arabidopsis thaliana
AT1G15180 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5222385-5224384 Arabidopsis thaliana
AT1G15180 2.0kb downstream 2.0kb downstream 4318 true Chr1: 5224385-5228702 Arabidopsis thaliana
AT1G15180 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5226703-5228702 Arabidopsis thaliana
AT1G15180 5.0kb upstream 5.0kb upstream 7318 true Chr1: 5219385-5226702 Arabidopsis thaliana
AT1G15180 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5219385-5224384 Arabidopsis thaliana
AT1G15180 5.0kb downstream 5.0kb downstream 7318 true Chr1: 5224385-5231702 Arabidopsis thaliana
AT1G15180 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5226703-5231702 Arabidopsis thaliana
AT1G15180 10.0kb upstream 10.0kb upstream 12318 true Chr1: 5214385-5226702 Arabidopsis thaliana
AT1G15180 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5214385-5224384 Arabidopsis thaliana
AT1G15180 10.0kb downstream 10.0kb downstream 12318 true Chr1: 5224385-5236702 Arabidopsis thaliana
AT1G15180 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5226703-5236702 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379235 5261 Brassicaceae View MSA
123831370 5264 Brassicales-Malvales View MSA
124349930 5266 SBM View MSA
124254486 5268 Malvidae View MSA
124070136 5270 Rosid View MSA
123747121 5271 Pentapetalae View MSA
122794225 5272 Eudicot View MSA
122042479 5273 Angiosperm View MSA
121350842 5274 Embryophyte View MSA
123428088 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.163        
cufflinks 0.036     Low Low
cufflinks 5.229        
cufflinks 0.12     Low  
cufflinks 5.367        
cufflinks 0.064     Low  

0 Strain