Gene : AT1G13380 A. thaliana TAIR10
Defline:  (1 of 1) PTHR31769//PTHR31769:SF5 - FAMILY NOT NAMED // EXPRESSED PROTEIN Genomic Order:  1328
Name:  ? AT1G13380 Secondary Identifier:  ? PAC:19654369
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G13380 0.5kb upstream 0.5kb upstream 1853 true Chr1: 4589071-4590923 Arabidopsis thaliana
AT1G13380 0.5kb upstream 0.5kb upstream 500 false Chr1: 4590424-4590923 Arabidopsis thaliana
AT1G13380 0.5kb downstream 0.5kb downstream 1853 true Chr1: 4588571-4590423 Arabidopsis thaliana
AT1G13380 0.5kb downstream 0.5kb downstream 500 false Chr1: 4588571-4589070 Arabidopsis thaliana
AT1G13380 1.0kb upstream 1.0kb upstream 2353 true Chr1: 4589071-4591423 Arabidopsis thaliana
AT1G13380 1.0kb upstream 1.0kb upstream 1000 false Chr1: 4590424-4591423 Arabidopsis thaliana
AT1G13380 1.0kb downstream 1.0kb downstream 2353 true Chr1: 4588071-4590423 Arabidopsis thaliana
AT1G13380 1.0kb downstream 1.0kb downstream 1000 false Chr1: 4588071-4589070 Arabidopsis thaliana
AT1G13380 2.0kb upstream 2.0kb upstream 3353 true Chr1: 4589071-4592423 Arabidopsis thaliana
AT1G13380 2.0kb upstream 2.0kb upstream 2000 false Chr1: 4590424-4592423 Arabidopsis thaliana
AT1G13380 2.0kb downstream 2.0kb downstream 3353 true Chr1: 4587071-4590423 Arabidopsis thaliana
AT1G13380 2.0kb downstream 2.0kb downstream 2000 false Chr1: 4587071-4589070 Arabidopsis thaliana
AT1G13380 5.0kb upstream 5.0kb upstream 6353 true Chr1: 4589071-4595423 Arabidopsis thaliana
AT1G13380 5.0kb upstream 5.0kb upstream 5000 false Chr1: 4590424-4595423 Arabidopsis thaliana
AT1G13380 5.0kb downstream 5.0kb downstream 6353 true Chr1: 4584071-4590423 Arabidopsis thaliana
AT1G13380 5.0kb downstream 5.0kb downstream 5000 false Chr1: 4584071-4589070 Arabidopsis thaliana
AT1G13380 10.0kb upstream 10.0kb upstream 11353 true Chr1: 4589071-4600423 Arabidopsis thaliana
AT1G13380 10.0kb upstream 10.0kb upstream 10000 false Chr1: 4590424-4600423 Arabidopsis thaliana
AT1G13380 10.0kb downstream 10.0kb downstream 11353 true Chr1: 4579071-4590423 Arabidopsis thaliana
AT1G13380 10.0kb downstream 10.0kb downstream 10000 false Chr1: 4579071-4589070 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372163 5261 Brassicaceae View MSA
123830155 5264 Brassicales-Malvales View MSA
124341993 5266 SBM View MSA
124242239 5268 Malvidae View MSA
124062439 5270 Rosid View MSA
123740308 5271 Pentapetalae View MSA
122797476 5272 Eudicot View MSA
122047761 5273 Angiosperm View MSA
121349405 5274 Embryophyte View MSA
123381298 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.352        
cufflinks 64.693     High High
cufflinks 10.511        
cufflinks 44.871     High  
cufflinks 9.082       Low
cufflinks 58.424     High  

0 Strain