Gene : AOC4 A. thaliana TAIR10
Primary Identifier:  ? AT1G13280 Defline:  (1 of 4) 5.3.99.6 - Allene-oxide cyclase
Genomic Order:  1318 Name:  ? AT1G13280
Secondary Identifier:  ? PAC:19658045
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-735 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G13280 0.5kb upstream 0.5kb upstream 1922 true Chr1: 4546954-4548875 Arabidopsis thaliana
AT1G13280 0.5kb upstream 0.5kb upstream 500 false Chr1: 4546954-4547453 Arabidopsis thaliana
AT1G13280 0.5kb downstream 0.5kb downstream 1922 true Chr1: 4547454-4549375 Arabidopsis thaliana
AT1G13280 0.5kb downstream 0.5kb downstream 500 false Chr1: 4548876-4549375 Arabidopsis thaliana
AT1G13280 1.0kb upstream 1.0kb upstream 2422 true Chr1: 4546454-4548875 Arabidopsis thaliana
AT1G13280 1.0kb upstream 1.0kb upstream 1000 false Chr1: 4546454-4547453 Arabidopsis thaliana
AT1G13280 1.0kb downstream 1.0kb downstream 2422 true Chr1: 4547454-4549875 Arabidopsis thaliana
AT1G13280 1.0kb downstream 1.0kb downstream 1000 false Chr1: 4548876-4549875 Arabidopsis thaliana
AT1G13280 2.0kb upstream 2.0kb upstream 3422 true Chr1: 4545454-4548875 Arabidopsis thaliana
AT1G13280 2.0kb upstream 2.0kb upstream 2000 false Chr1: 4545454-4547453 Arabidopsis thaliana
AT1G13280 2.0kb downstream 2.0kb downstream 3422 true Chr1: 4547454-4550875 Arabidopsis thaliana
AT1G13280 2.0kb downstream 2.0kb downstream 2000 false Chr1: 4548876-4550875 Arabidopsis thaliana
AT1G13280 5.0kb upstream 5.0kb upstream 6422 true Chr1: 4542454-4548875 Arabidopsis thaliana
AT1G13280 5.0kb upstream 5.0kb upstream 5000 false Chr1: 4542454-4547453 Arabidopsis thaliana
AT1G13280 5.0kb downstream 5.0kb downstream 6422 true Chr1: 4547454-4553875 Arabidopsis thaliana
AT1G13280 5.0kb downstream 5.0kb downstream 5000 false Chr1: 4548876-4553875 Arabidopsis thaliana
AT1G13280 10.0kb upstream 10.0kb upstream 11422 true Chr1: 4537454-4548875 Arabidopsis thaliana
AT1G13280 10.0kb upstream 10.0kb upstream 10000 false Chr1: 4537454-4547453 Arabidopsis thaliana
AT1G13280 10.0kb downstream 10.0kb downstream 11422 true Chr1: 4547454-4558875 Arabidopsis thaliana
AT1G13280 10.0kb downstream 10.0kb downstream 10000 false Chr1: 4548876-4558875 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380510 5261 Brassicaceae View MSA
123828498 5264 Brassicales-Malvales View MSA
124339249 5266 SBM View MSA
124252758 5268 Malvidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.417       Low
cufflinks 44.872     High  
cufflinks 29.405     High  
cufflinks 55.459     High High
cufflinks 32.389     High  
cufflinks 56.943     High High

0 Strain