Gene : AT1G13920 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31471//PTHR31471:SF5 - FAMILY NOT NAMED // F7A19.1 PROTEIN-RELATED Genomic Order:  1385
Name:  ? AT1G13920 Secondary Identifier:  ? PAC:19651008
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G13920 0.5kb upstream 0.5kb upstream 2067 true Chr1: 4757688-4759754 Arabidopsis thaliana
AT1G13920 0.5kb upstream 0.5kb upstream 500 false Chr1: 4757688-4758187 Arabidopsis thaliana
AT1G13920 0.5kb downstream 0.5kb downstream 2067 true Chr1: 4758188-4760254 Arabidopsis thaliana
AT1G13920 0.5kb downstream 0.5kb downstream 500 false Chr1: 4759755-4760254 Arabidopsis thaliana
AT1G13920 1.0kb upstream 1.0kb upstream 2567 true Chr1: 4757188-4759754 Arabidopsis thaliana
AT1G13920 1.0kb upstream 1.0kb upstream 1000 false Chr1: 4757188-4758187 Arabidopsis thaliana
AT1G13920 1.0kb downstream 1.0kb downstream 2567 true Chr1: 4758188-4760754 Arabidopsis thaliana
AT1G13920 1.0kb downstream 1.0kb downstream 1000 false Chr1: 4759755-4760754 Arabidopsis thaliana
AT1G13920 2.0kb upstream 2.0kb upstream 3567 true Chr1: 4756188-4759754 Arabidopsis thaliana
AT1G13920 2.0kb upstream 2.0kb upstream 2000 false Chr1: 4756188-4758187 Arabidopsis thaliana
AT1G13920 2.0kb downstream 2.0kb downstream 3567 true Chr1: 4758188-4761754 Arabidopsis thaliana
AT1G13920 2.0kb downstream 2.0kb downstream 2000 false Chr1: 4759755-4761754 Arabidopsis thaliana
AT1G13920 5.0kb upstream 5.0kb upstream 6567 true Chr1: 4753188-4759754 Arabidopsis thaliana
AT1G13920 5.0kb upstream 5.0kb upstream 5000 false Chr1: 4753188-4758187 Arabidopsis thaliana
AT1G13920 5.0kb downstream 5.0kb downstream 6567 true Chr1: 4758188-4764754 Arabidopsis thaliana
AT1G13920 5.0kb downstream 5.0kb downstream 5000 false Chr1: 4759755-4764754 Arabidopsis thaliana
AT1G13920 10.0kb upstream 10.0kb upstream 11567 true Chr1: 4748188-4759754 Arabidopsis thaliana
AT1G13920 10.0kb upstream 10.0kb upstream 10000 false Chr1: 4748188-4758187 Arabidopsis thaliana
AT1G13920 10.0kb downstream 10.0kb downstream 11567 true Chr1: 4758188-4769754 Arabidopsis thaliana
AT1G13920 10.0kb downstream 10.0kb downstream 10000 false Chr1: 4759755-4769754 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362696 5261 Brassicaceae View MSA
123840339 5264 Brassicales-Malvales View MSA
124341924 5266 SBM View MSA
124238094 5268 Malvidae View MSA
124067331 5270 Rosid View MSA
123743301 5271 Pentapetalae View MSA
122785962 5272 Eudicot View MSA
122046152 5273 Angiosperm View MSA
121351512 5274 Embryophyte View MSA
123382200 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.463        
cufflinks 11.87       High
cufflinks 1.52        
cufflinks 9.3        
cufflinks 1.116       Low
cufflinks 9.456        

0 Strain