Gene : AT1G12700 A. thaliana TAIR10
Defline:  (1 of 1) PF00271//PF13041 - Helicase conserved C-terminal domain (Helicase_C) // PPR repeat family (PPR_2) Genomic Order:  1257
Name:  ? AT1G12700 Secondary Identifier:  ? PAC:19649809
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G12700 0.5kb upstream 0.5kb upstream 3278 true Chr1: 4323556-4326833 Arabidopsis thaliana
AT1G12700 0.5kb upstream 0.5kb upstream 500 false Chr1: 4326334-4326833 Arabidopsis thaliana
AT1G12700 0.5kb downstream 0.5kb downstream 3278 true Chr1: 4323056-4326333 Arabidopsis thaliana
AT1G12700 0.5kb downstream 0.5kb downstream 500 false Chr1: 4323056-4323555 Arabidopsis thaliana
AT1G12700 1.0kb upstream 1.0kb upstream 3778 true Chr1: 4323556-4327333 Arabidopsis thaliana
AT1G12700 1.0kb upstream 1.0kb upstream 1000 false Chr1: 4326334-4327333 Arabidopsis thaliana
AT1G12700 1.0kb downstream 1.0kb downstream 3778 true Chr1: 4322556-4326333 Arabidopsis thaliana
AT1G12700 1.0kb downstream 1.0kb downstream 1000 false Chr1: 4322556-4323555 Arabidopsis thaliana
AT1G12700 2.0kb upstream 2.0kb upstream 4778 true Chr1: 4323556-4328333 Arabidopsis thaliana
AT1G12700 2.0kb upstream 2.0kb upstream 2000 false Chr1: 4326334-4328333 Arabidopsis thaliana
AT1G12700 2.0kb downstream 2.0kb downstream 4778 true Chr1: 4321556-4326333 Arabidopsis thaliana
AT1G12700 2.0kb downstream 2.0kb downstream 2000 false Chr1: 4321556-4323555 Arabidopsis thaliana
AT1G12700 5.0kb upstream 5.0kb upstream 7778 true Chr1: 4323556-4331333 Arabidopsis thaliana
AT1G12700 5.0kb upstream 5.0kb upstream 5000 false Chr1: 4326334-4331333 Arabidopsis thaliana
AT1G12700 5.0kb downstream 5.0kb downstream 7778 true Chr1: 4318556-4326333 Arabidopsis thaliana
AT1G12700 5.0kb downstream 5.0kb downstream 5000 false Chr1: 4318556-4323555 Arabidopsis thaliana
AT1G12700 10.0kb upstream 10.0kb upstream 12778 true Chr1: 4323556-4336333 Arabidopsis thaliana
AT1G12700 10.0kb upstream 10.0kb upstream 10000 false Chr1: 4326334-4336333 Arabidopsis thaliana
AT1G12700 10.0kb downstream 10.0kb downstream 12778 true Chr1: 4313556-4326333 Arabidopsis thaliana
AT1G12700 10.0kb downstream 10.0kb downstream 10000 false Chr1: 4313556-4323555 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122328387 5261 Brassicaceae Singleton cluster - no MSA
123841436 5264 Brassicales-Malvales View MSA
124350672 5266 SBM View MSA
124254642 5268 Malvidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.079        
cufflinks 2.411       High
cufflinks 2.161        
cufflinks 2.326        
cufflinks 2.039        
cufflinks 1.766       Low

0 Strain