Gene : AT1G11900 A. thaliana TAIR10
Defline:  (1 of 4) PTHR24015//PTHR24015:SF707 - FAMILY NOT NAMED // PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Genomic Order:  1169
Name:  ? AT1G11900 Secondary Identifier:  ? PAC:19650373
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G11900 0.5kb upstream 0.5kb upstream 2061 true Chr1: 4013121-4015181 Arabidopsis thaliana
AT1G11900 0.5kb upstream 0.5kb upstream 500 false Chr1: 4014682-4015181 Arabidopsis thaliana
AT1G11900 0.5kb downstream 0.5kb downstream 2061 true Chr1: 4012621-4014681 Arabidopsis thaliana
AT1G11900 0.5kb downstream 0.5kb downstream 500 false Chr1: 4012621-4013120 Arabidopsis thaliana
AT1G11900 1.0kb upstream 1.0kb upstream 2561 true Chr1: 4013121-4015681 Arabidopsis thaliana
AT1G11900 1.0kb upstream 1.0kb upstream 1000 false Chr1: 4014682-4015681 Arabidopsis thaliana
AT1G11900 1.0kb downstream 1.0kb downstream 2561 true Chr1: 4012121-4014681 Arabidopsis thaliana
AT1G11900 1.0kb downstream 1.0kb downstream 1000 false Chr1: 4012121-4013120 Arabidopsis thaliana
AT1G11900 2.0kb upstream 2.0kb upstream 3561 true Chr1: 4013121-4016681 Arabidopsis thaliana
AT1G11900 2.0kb upstream 2.0kb upstream 2000 false Chr1: 4014682-4016681 Arabidopsis thaliana
AT1G11900 2.0kb downstream 2.0kb downstream 3561 true Chr1: 4011121-4014681 Arabidopsis thaliana
AT1G11900 2.0kb downstream 2.0kb downstream 2000 false Chr1: 4011121-4013120 Arabidopsis thaliana
AT1G11900 5.0kb upstream 5.0kb upstream 6561 true Chr1: 4013121-4019681 Arabidopsis thaliana
AT1G11900 5.0kb upstream 5.0kb upstream 5000 false Chr1: 4014682-4019681 Arabidopsis thaliana
AT1G11900 5.0kb downstream 5.0kb downstream 6561 true Chr1: 4008121-4014681 Arabidopsis thaliana
AT1G11900 5.0kb downstream 5.0kb downstream 5000 false Chr1: 4008121-4013120 Arabidopsis thaliana
AT1G11900 10.0kb upstream 10.0kb upstream 11561 true Chr1: 4013121-4024681 Arabidopsis thaliana
AT1G11900 10.0kb upstream 10.0kb upstream 10000 false Chr1: 4014682-4024681 Arabidopsis thaliana
AT1G11900 10.0kb downstream 10.0kb downstream 11561 true Chr1: 4003121-4014681 Arabidopsis thaliana
AT1G11900 10.0kb downstream 10.0kb downstream 10000 false Chr1: 4003121-4013120 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362412 5261 Brassicaceae View MSA
123836276 5264 Brassicales-Malvales View MSA
124337804 5266 SBM View MSA
124241284 5268 Malvidae View MSA
124064756 5270 Rosid View MSA
123739873 5271 Pentapetalae View MSA
122787306 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.521       High
cufflinks 2.072        
cufflinks 2.022        
cufflinks 2.023        
cufflinks 2.096        
cufflinks 1.851       Low

0 Strain