Gene : TEM1 A. thaliana TAIR10
Primary Identifier:  ? AT1G25560 Defline:  (1 of 6) K09287 - RAV-like factor (RAV)
Genomic Order:  2567 Name:  ? AT1G25560
Secondary Identifier:  ? PAC:19653071
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G25560 0.5kb upstream 0.5kb upstream 1865 true Chr1: 8981677-8983541 Arabidopsis thaliana
AT1G25560 0.5kb upstream 0.5kb upstream 500 false Chr1: 8983042-8983541 Arabidopsis thaliana
AT1G25560 0.5kb downstream 0.5kb downstream 1865 true Chr1: 8981177-8983041 Arabidopsis thaliana
AT1G25560 0.5kb downstream 0.5kb downstream 500 false Chr1: 8981177-8981676 Arabidopsis thaliana
AT1G25560 1.0kb upstream 1.0kb upstream 2365 true Chr1: 8981677-8984041 Arabidopsis thaliana
AT1G25560 1.0kb upstream 1.0kb upstream 1000 false Chr1: 8983042-8984041 Arabidopsis thaliana
AT1G25560 1.0kb downstream 1.0kb downstream 2365 true Chr1: 8980677-8983041 Arabidopsis thaliana
AT1G25560 1.0kb downstream 1.0kb downstream 1000 false Chr1: 8980677-8981676 Arabidopsis thaliana
AT1G25560 2.0kb upstream 2.0kb upstream 3365 true Chr1: 8981677-8985041 Arabidopsis thaliana
AT1G25560 2.0kb upstream 2.0kb upstream 2000 false Chr1: 8983042-8985041 Arabidopsis thaliana
AT1G25560 2.0kb downstream 2.0kb downstream 3365 true Chr1: 8979677-8983041 Arabidopsis thaliana
AT1G25560 2.0kb downstream 2.0kb downstream 2000 false Chr1: 8979677-8981676 Arabidopsis thaliana
AT1G25560 5.0kb upstream 5.0kb upstream 6365 true Chr1: 8981677-8988041 Arabidopsis thaliana
AT1G25560 5.0kb upstream 5.0kb upstream 5000 false Chr1: 8983042-8988041 Arabidopsis thaliana
AT1G25560 5.0kb downstream 5.0kb downstream 6365 true Chr1: 8976677-8983041 Arabidopsis thaliana
AT1G25560 5.0kb downstream 5.0kb downstream 5000 false Chr1: 8976677-8981676 Arabidopsis thaliana
AT1G25560 10.0kb upstream 10.0kb upstream 11365 true Chr1: 8981677-8993041 Arabidopsis thaliana
AT1G25560 10.0kb upstream 10.0kb upstream 10000 false Chr1: 8983042-8993041 Arabidopsis thaliana
AT1G25560 10.0kb downstream 10.0kb downstream 11365 true Chr1: 8971677-8983041 Arabidopsis thaliana
AT1G25560 10.0kb downstream 10.0kb downstream 10000 false Chr1: 8971677-8981676 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375082 5261 Brassicaceae View MSA
123800874 5264 Brassicales-Malvales View MSA
124346726 5266 SBM View MSA
124243477 5268 Malvidae View MSA
124062734 5270 Rosid View MSA
123743747 5271 Pentapetalae View MSA
122794960 5272 Eudicot View MSA
122047550 5273 Angiosperm View MSA
121310758 5274 Embryophyte View MSA
123428387 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 58.92     High  
cufflinks 29.722     High Low
cufflinks 56.824     High  
cufflinks 33.553     High  
cufflinks 73.729     High High
cufflinks 35.825     High  

0 Strain